PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG90919.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 495aa MW: 52813.1 Da PI: 4.7475

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG90919.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.8	4.4e-11	267	341	2	68
trihelix 2 WtkqevlaLiearr..emeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ +++l+L++ +r ++e++ r+gk + ++W++vs++++e+g+ r+ C+ k+en+ + ++k+ + + GBG90919.1 267 WSVEQILVLVQTKReyDDEQEWRTGKikgkfkNNPTRWADVSERLAEKGVLRTLGSCQRKFENVMTAFRKVHDFQ 341 ************44445555565444455599**********************************99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MSSDDSYEDD IFASGHGEAV LASLQGGVCP PGLAAGMGVQ PQVAAPSSTL TWSAYVPFSD 60 LLCTGTASRG EASVENQVGY IDMESLPEAV DIESFCESAG FDAQAIASTP PGQRDSIVVA 120 TKRSATSTPE VEARSAGRGR PRTAGGSSGT AGARAPASGA KTGIPTNTRA SASASKTVIP 180 SSTRVVSTTM KTGIPSSSRA PAGSAKTGNP SHQLRQEGDS SSQQRQPCGT IPSQPHAVAD 240 DVDDDVELSS CGTQEESGDC QLGRDTWSVE QILVLVQTKR EYDDEQEWRT GKIKGKFKNN 300 PTRWADVSER LAEKGVLRTL GSCQRKFENV MTAFRKVHDF QLRSGEEEWF ELCTTERRER 360 KVGYSIKREV YDLMERLYGE DANISPVNLT DGGVPFTVSE GGEGSNESST TNEAHDSWSR 420 RRKTAKERTI AEATAAVRDN TSAMTDAFQE STAAQKESDA TLVAVMDRMT DRMEANGNAL 480 CGALSKIADA FTRTP

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MSSDDSYEDD IFASGHGEAV LASLQGGVCP PGLAAGMGVQ PQVAAPSSTL TWSAYVPFSD  60
LLCTGTASRG EASVENQVGY IDMESLPEAV DIESFCESAG FDAQAIASTP PGQRDSIVVA  120
TKRSATSTPE VEARSAGRGR PRTAGGSSGT AGARAPASGA KTGIPTNTRA SASASKTVIP  180
SSTRVVSTTM KTGIPSSSRA PAGSAKTGNP SHQLRQEGDS SSQQRQPCGT IPSQPHAVAD  240
DVDDDVELSS CGTQEESGDC QLGRDTWSVE QILVLVQTKR EYDDEQEWRT GKIKGKFKNN  300
PTRWADVSER LAEKGVLRTL GSCQRKFENV MTAFRKVHDF QLRSGEEEWF ELCTTERRER  360
KVGYSIKREV YDLMERLYGE DANISPVNLT DGGVPFTVSE GGEGSNESST TNEAHDSWSR  420
RRKTAKERTI AEATAAVRDN TSAMTDAFQE STAAQKESDA TLVAVMDRMT DRMEANGNAL  480
CGALSKIADA FTRTP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	424	SRRRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-09	Trihelix family protein