PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG91951.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 932aa MW: 102814 Da PI: 6.2726

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG91951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.1	8.3e-12	320	393	2	68
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ +++ aLi+a+r m+++++r k++k +W +v+++++ g+e ++++C +kw+nl ++ kk+ + + GBG91951.1 320 WSVEHIIALIRAKRdqdvhlqGMGHAYGRMKARKWKWNDVARRLKNVGVEWKAEKCGKKWDNLMQQLKKVHHFQ 393 9***********66666666666666889************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence
MADVFRQLPL LLPVVFLLVV VVVFHVCFLG NAPRRRRRRT LPMKPVRTDS RQGSPRGGGE 60 QVVSRCVIGS SSSVCRLSLG VGNSALPPHL QPLPDSSDEE EREGRARTVP LGSGSTQEWA 120 WTELCGGSVG VHEQSFTELL RPGLDGEERH GGVNLSSAVA GTIDFHLQER AGSPTFHAVT 180 VSGVCCVQPR TSTWHCCGGG GNLDDVGDDR DGRLLWAEQR RELREGREEA IRRRVERLRM 240 DRQAEEVEEP DAGLPSEEDD DENKGEGGDG NGVHASPSEN SDMGGKGGKT QAKSGNGRGR 300 PKKAQAKPND GEAEEKRNFW SVEHIIALIR AKRDQDVHLQ GMGHAYGRMK ARKWKWNDVA 360 RRLKNVGVEW KAEKCGKKWD NLMQQLKKVH HFQSSSGGID FFQLSAKERA SKGFNFNMNR 420 VVYDEIEGLT GFNETINSRN VADTGASRGV RLPSTSNGDP EAVGDADAGA GGDDEEEGST 480 RGSSQTTGSP GAFGKRKSTR QQTFEAMTDC MEKHGALMAA TMESASXRQC SIQLRXXEAL 540 EXEVQAVIDV SAKRSTAPQP RGEAVPVVRE VADGAKAGDG GAVGEDDEAL VNKLRGQRAE 600 AKAMEVTARL WTDDIRFWND TRGHKIIQII HEARVYLVDV ATGVQPSMIR RSINLPHSSI 660 PQKKIEDGSE LRAAKERALK VGNIAKRAIH GWIFKSDSRH KGYHLAYQYA LNHTATDIAR 720 VMWVSEDWRS LVSPMVIRNT LELGMELPLW FVGANVVDRH QDDECATYQE TIAQRLVCDF 780 NNVVEAAQVM DSGRVSYERL KSLAEAMRYL LAAAVWIMRM AEDDSRSHYD SWVFVQLTAK 840 TTLLASMDRH FDSRRHVLQA ATVMTDKLGR PPPTFAPPPL YIPDWASKCG VTFNHDATLS 900 SPMEATKMEW IDIGPPEEED DDDEDVDGAE GG

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence

MADVFRQLPL LLPVVFLLVV VVVFHVCFLG NAPRRRRRRT LPMKPVRTDS RQGSPRGGGE  60
QVVSRCVIGS SSSVCRLSLG VGNSALPPHL QPLPDSSDEE EREGRARTVP LGSGSTQEWA  120
WTELCGGSVG VHEQSFTELL RPGLDGEERH GGVNLSSAVA GTIDFHLQER AGSPTFHAVT  180
VSGVCCVQPR TSTWHCCGGG GNLDDVGDDR DGRLLWAEQR RELREGREEA IRRRVERLRM  240
DRQAEEVEEP DAGLPSEEDD DENKGEGGDG NGVHASPSEN SDMGGKGGKT QAKSGNGRGR  300
PKKAQAKPND GEAEEKRNFW SVEHIIALIR AKRDQDVHLQ GMGHAYGRMK ARKWKWNDVA  360
RRLKNVGVEW KAEKCGKKWD NLMQQLKKVH HFQSSSGGID FFQLSAKERA SKGFNFNMNR  420
VVYDEIEGLT GFNETINSRN VADTGASRGV RLPSTSNGDP EAVGDADAGA GGDDEEEGST  480
RGSSQTTGSP GAFGKRKSTR QQTFEAMTDC MEKHGALMAA TMESASXRQC SIQLRXXEAL  540
EXEVQAVIDV SAKRSTAPQP RGEAVPVVRE VADGAKAGDG GAVGEDDEAL VNKLRGQRAE  600
AKAMEVTARL WTDDIRFWND TRGHKIIQII HEARVYLVDV ATGVQPSMIR RSINLPHSSI  660
PQKKIEDGSE LRAAKERALK VGNIAKRAIH GWIFKSDSRH KGYHLAYQYA LNHTATDIAR  720
VMWVSEDWRS LVSPMVIRNT LELGMELPLW FVGANVVDRH QDDECATYQE TIAQRLVCDF  780
NNVVEAAQVM DSGRVSYERL KSLAEAMRYL LAAAVWIMRM AEDDSRSHYD SWVFVQLTAK  840
TTLLASMDRH FDSRRHVLQA ATVMTDKLGR PPPTFAPPPL YIPDWASKCG VTFNHDATLS  900
SPMEATKMEW IDIGPPEEED DDDEDVDGAE GG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	39	RRRRRR
2	34	40	RRRRRRT
3	35	41	RRRRRRT
4	297	305	GRGRPKKAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-07	Trihelix family protein