PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG92712.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 938aa MW: 102182 Da PI: 9.4559

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG92712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.3	2.3e-14	325	398	2	68
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ +++ aLi+a+r+ + +l+ r k ++ +W +v+++++ g+ r+p++C +kw+nl +++kk+ + + GBG92712.1 325 WSVEHIIALIRAKRDQDAHLQgmghayaRMKPREWKWNDVARRLKNVGVDRKPEKCGKKWDNLMQQFKKVHHFQ 398 9***********7776666433333367899**********************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence
MADSFRKLPL LLLAIFLLVV VVVLHVCFVG SAPRRQRRRT SSMKAVRTDS GQGSPRGGGE 60 QVVSRCAVGS SSPACRLSLG VGNSSLPPHL QPLLDSSDEE EREGRARTVP LGSGSTQEWS 120 WTELCGGSGG VHSQSFTELL APGLDGEEGH GGSNVSSGLS TGRCGSQTRT VIVNPHVGDD 180 GGQLTAVDRS LKSAGAQQWQ GRATSISRST HGRPSFMQSP APVAEERRKI REGREEATRR 240 GVERLRMDRQ AEEVEEPHAG LPSEDDDNDG AGEAGDGNGG YASPSQNSNG GWKGGKTKAT 300 SGNGHGRPKK AQAKANDGEE KRNFWSVEHI IALIRAKRDQ DAHLQGMGHA YARMKPREWK 360 WNDVARRLKN VGVDRKPEKC GKKWDNLMQQ FKKVHHFQSS SGGIDFFQLN GKERARHGFN 420 FDMDLAVYGE IEGSSGSNET INPKNVADTG ARGGVRLPST TTADPQAVGD ADAGAGGEDE 480 DEGSTHGSSQ TSGSPHGFGK RKSTRQQTFE AMMECMDKHG ALMAATMESA NKRQCSIQLR 540 QYLLAAISEV DGSTFFLRAF HSIFNTRHAI SSRSVPSRRV LGKQVREGEV APKKGRHDPA 600 KRRRGIQGGK AAVGREVEAD WVDAQERREE DDDFEEVDEQ TLVRKVKQRT GGAIRIKRVG 660 AAEVAPDQRQ TPSSKRSEQA VGVASSSQAV VDQSTMRSPA PQPRGEAVQG ASAVADVAKA 720 GDGGAASEDD EPQVMKLRGQ RPEAKAMEPS AIRRSISLPH SSIPQKKIKD ASELRAAKER 780 ALKVESIAKR AIHGWIFKSD SRHKGYHLEY QYALNHAATD MARAMWALED WRSLVSPMAI 840 RNTLELVMKL PLWFVGANVV DRHQDDECAA YQEAIAQRLV RDFTNVVEMA QAMDSGRVSY 900 ERLKSLAEAM RYLLAAAAWI MRMAGDNARS HFDAWVFM

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence

MADSFRKLPL LLLAIFLLVV VVVLHVCFVG SAPRRQRRRT SSMKAVRTDS GQGSPRGGGE  60
QVVSRCAVGS SSPACRLSLG VGNSSLPPHL QPLLDSSDEE EREGRARTVP LGSGSTQEWS  120
WTELCGGSGG VHSQSFTELL APGLDGEEGH GGSNVSSGLS TGRCGSQTRT VIVNPHVGDD  180
GGQLTAVDRS LKSAGAQQWQ GRATSISRST HGRPSFMQSP APVAEERRKI REGREEATRR  240
GVERLRMDRQ AEEVEEPHAG LPSEDDDNDG AGEAGDGNGG YASPSQNSNG GWKGGKTKAT  300
SGNGHGRPKK AQAKANDGEE KRNFWSVEHI IALIRAKRDQ DAHLQGMGHA YARMKPREWK  360
WNDVARRLKN VGVDRKPEKC GKKWDNLMQQ FKKVHHFQSS SGGIDFFQLN GKERARHGFN  420
FDMDLAVYGE IEGSSGSNET INPKNVADTG ARGGVRLPST TTADPQAVGD ADAGAGGEDE  480
DEGSTHGSSQ TSGSPHGFGK RKSTRQQTFE AMMECMDKHG ALMAATMESA NKRQCSIQLR  540
QYLLAAISEV DGSTFFLRAF HSIFNTRHAI SSRSVPSRRV LGKQVREGEV APKKGRHDPA  600
KRRRGIQGGK AAVGREVEAD WVDAQERREE DDDFEEVDEQ TLVRKVKQRT GGAIRIKRVG  660
AAEVAPDQRQ TPSSKRSEQA VGVASSSQAV VDQSTMRSPA PQPRGEAVQG ASAVADVAKA  720
GDGGAASEDD EPQVMKLRGQ RPEAKAMEPS AIRRSISLPH SSIPQKKIKD ASELRAAKER  780
ALKVESIAKR AIHGWIFKSD SRHKGYHLEY QYALNHAATD MARAMWALED WRSLVSPMAI  840
RNTLELVMKL PLWFVGANVV DRHQDDECAA YQEAIAQRLV RDFTNVVEMA QAMDSGRVSY  900
ERLKSLAEAM RYLLAAAAWI MRMAGDNARS HFDAWVFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	39	RRQRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-07	Trihelix family protein