PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG93140.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Trihelix
Protein Properties Length: 428aa    MW: 47734.7 Da    PI: 10.2033
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG93140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix316.5e-10253327269
    trihelix   2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                 W+ +  ++L++ +r       ++ ++++r k k+ +W++ sk+m+  g  + +  C +kw+nl + ykki++ ++
  GBG93140.1 253 WSAEDQMLLVRCKReqdmhlaSLSHNYGRMKMKEWKWDDMSKRMANAGRPKDADDCMKKWDNLFQNYKKIQRFQN 327
                 8999999999999944444445555555778**************************************987655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
ACQNTHLQWS RARAAAEVNF MADVGRRLPL LVLAVVVFLI IVFLHVCLSW WLWKQQRKRR  60
ASTRRAAGER LMAGMQARAA TAAGQGGVRS SAPEPRRQYD PSMYTHLESW DTPLPPSDEE  120
PEKEKLSTLP LVSGSTQFWS QTMRAGGLAH DEGGEFTSLL HQGLRDDDGG GVDMRFGLCS  180
GGGREASRTF IIDGVRSARG VEHGGSLHTE QSTLRRAAPV TRAVGPSAAG RQHGSTAPRG  240
GVSDDVGKSP TYWSAEDQML LVRCKREQDM HLASLSHNYG RMKMKEWKWD DMSKRMANAG  300
RPKDADDCMK KWDNLFQNYK KIQRFQNASG RPDFFRLTNE ERKEHNFKFR MDRALYNEIH  360
AGMVGNHTIF PPNVVDTGSP EAASGTATNV FVYVGPRTWF AAGDSPRPRD GALRANTRRV  420
FSYQHSSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-07Trihelix family protein