PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG93485.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 847aa MW: 92518.4 Da PI: 7.5671

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG93485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.1	3.1e-10	345	420	2	70
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + aL++arr m++++ r k ++ Weev ++++ g++r + C +kw+nl +++kk+ + ++ GBG93485.1 345 WSVGDTIALVRARRdqdlyfvGMGTSFARMKTREWMWEEVRVRLQSMGVTRDVVDCGKKWDNLMQQFKKVHKLQNL 420 899999******999999999999*****************************************9987765 PP

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence
MADGLHRLPL LVLVTVLLLV VVFFHVCFVG LVPIAARRRR SXKKADRMDR QVANGRPTGT 60 TSGGSNRQHS AGYVAKRPYD PRSYAHLPSH EIPLPSSDDE GGDARSLTLP LGSGSTQEWA 120 ATQSCGRGRV ETPWSYTSLL NEGLCDDDDN AAVDLSFQLS SSSGEAVTHT RIINPHXGVD 180 CADNTHGGVC GPRDGGLPQS LRERGGDRNE STSTVGGGVG AHERPEWMRL SPALRSGSGA 240 PSARQRPKHL RQEGADVQRD GKQLWAECRQ ALHQRGTETI TRGVQRLHLD EGDEAAAEDA 300 QGALGRKATK DGATARKGHA AKSRWSKKMD DDTGRSDGEG GRNFWSVGDT IALVRARRDQ 360 DLYFVGMGTS FARMKTREWM WEEVRVRLQS MGVTRDVVDC GKKWDNLMQQ FKKVHKLQNL 420 SDGKDYFKLA SKDRRSEGFS FVMDRSVYGE MEAMTKGDHT IHSKNLADTG ATGGVQMPAG 480 AGAAGDTMAT EGGGDATDEE QGSTKDSTFS AGSGGGYGKR KNMRQQTFEA VADVMEKHGA 540 LMASTMDSAS KRQCSMMSPE CKRPPCPGVS SCRKFPKSST TLTRIVDPAQ LQQAIARATA 600 AENIALRVLY GWVFKSENRP RGFNAAFQYA LESMATNIAR VMWNGEEWSN VVSAPICAHT 660 IDLNMDLPLW FAGTNIKDRP EDDDMAAHQE STVVCITHAF RAAVQMGGIV DDSFISHERL 720 CRIADCFRLL LAACMWLMRV VGDDVRGHYE AFYFAKLVAK PMLVASMHRV FDHRRSIIRA 780 TNAVTERLGK VNATLGEYPK SILERASCGI VFGQDASITG PEDAKRRDWL GSGPLEDGDD 840 DDGKEDA

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence

MADGLHRLPL LVLVTVLLLV VVFFHVCFVG LVPIAARRRR SXKKADRMDR QVANGRPTGT  60
TSGGSNRQHS AGYVAKRPYD PRSYAHLPSH EIPLPSSDDE GGDARSLTLP LGSGSTQEWA  120
ATQSCGRGRV ETPWSYTSLL NEGLCDDDDN AAVDLSFQLS SSSGEAVTHT RIINPHXGVD  180
CADNTHGGVC GPRDGGLPQS LRERGGDRNE STSTVGGGVG AHERPEWMRL SPALRSGSGA  240
PSARQRPKHL RQEGADVQRD GKQLWAECRQ ALHQRGTETI TRGVQRLHLD EGDEAAAEDA  300
QGALGRKATK DGATARKGHA AKSRWSKKMD DDTGRSDGEG GRNFWSVGDT IALVRARRDQ  360
DLYFVGMGTS FARMKTREWM WEEVRVRLQS MGVTRDVVDC GKKWDNLMQQ FKKVHKLQNL  420
SDGKDYFKLA SKDRRSEGFS FVMDRSVYGE MEAMTKGDHT IHSKNLADTG ATGGVQMPAG  480
AGAAGDTMAT EGGGDATDEE QGSTKDSTFS AGSGGGYGKR KNMRQQTFEA VADVMEKHGA  540
LMASTMDSAS KRQCSMMSPE CKRPPCPGVS SCRKFPKSST TLTRIVDPAQ LQQAIARATA  600
AENIALRVLY GWVFKSENRP RGFNAAFQYA LESMATNIAR VMWNGEEWSN VVSAPICAHT  660
IDLNMDLPLW FAGTNIKDRP EDDDMAAHQE STVVCITHAF RAAVQMGGIV DDSFISHERL  720
CRIADCFRLL LAACMWLMRV VGDDVRGHYE AFYFAKLVAK PMLVASMHRV FDHRRSIIRA  780
TNAVTERLGK VNATLGEYPK SILERASCGI VFGQDASITG PEDAKRRDWL GSGPLEDGDD  840
DDGKEDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-06	Trihelix family protein