PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0003s0054.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27235 Da    PI: 9.8521
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0003s0054.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.67.9e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvt+skRrng++KKAeEL vLCda+v+vi++sst+k++ey+s
  Kaladp0003s0054.1.p  9 KRIENTTNRQVTYSKRRNGLFKKAEELTVLCDAKVSVIMISSTQKIHEYIS 59
                         79***********************************************86 PP
2K-box90.72.7e-3071168198
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          yqk+s+++++++++e++q+ l+k+k++++ L++e+R+++Ge+L++Ls++eL+ Leq+++++ + iR++K++ + + +++l+kk ++++e+
  Kaladp0003s0054.1.p  71 YQKASNTDVWSKQYERMQETLRKVKEKNKRLRTEIRQRMGECLNDLSFEELRGLEQDMDNAATAIRARKYKAIGSRTDTLRKKVRNVEEI 160
                          8999************************************************************************************** PP

                K-box  91 nkaLrkkl 98 
                           ++L+++l
  Kaladp0003s0054.1.p 161 YRKLNQEL 168
                          ****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KAEELTVLCD AKVSVIMISS TQKIHEYISP  60
GITTKQVVDL YQKASNTDVW SKQYERMQET LRKVKEKNKR LRTEIRQRMG ECLNDLSFEE  120
LRGLEQDMDN AATAIRARKY KAIGSRTDTL RKKVRNVEEI YRKLNQELVC PQSNFEFARE  180
AREEDRHYGL VDNSGDYESV IALGPRVFAL HLNPNQSANM QSCGGSDLTY TLMSGN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-86MIKC_MADS family protein