PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0006s0050.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 221aa    MW: 24111.2 Da    PI: 5.2521
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0006s0050.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.23.8e-56381421102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd
  Kaladp0006s0050.1.p  38 QLQMFWAYQrqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 127
                          89****9998899***************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          ifdflvdivprde+k
  Kaladp0006s0050.1.p 128 IFDFLVDIVPRDEIK 142
                          ************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MDSHHQQQQV GQQPPPPAPG VGAPAPFHHQ LQQQQQQQLQ MFWAYQRQEI EQVSDFKNHQ  60
LPLARIKKIM KADEDVRMIS AEAPILFSKA CELFILELTI RSWLHAEENK RRTLQKNDIA  120
AAITRTDIFD FLVDIVPRDE IKEEVGIAGL VGGTVPFYYP AMGQPAGMMM GRPVGDPAGG  180
GYLAPPSQAW QSVWQTAGAD EGAYGSGGGN GGPQQGNVDG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.25e-81NF-YC family protein