PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0720.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LSD

Protein Properties

Length: 398aa MW: 42200.5 Da PI: 4.3236

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0720.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37	5.7e-12	301	325	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP GA++VRC +C+tV Kaladp0008s0720.1.p 301 CGSCRSLLSYPKGAKYVRCLCCQTV 325 ************************9 PP
2	zf-LSD1	28.3	2.8e-09	339	363	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+Y +G p+VRC++C+++ Kaladp0008s0720.1.p 339 CGRCAVLLMYYYGCPAVRCSNCQFI 363 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MSGVKEEEGE DVKEVKQEEV LRPPVPLLAG LIKQEAMECQ PVRSRFRNSG EVGGADGSFC 60 PTASVGDFLG ENRGVDPMEM KMGDELSIAE EGDDDAGLPP GWGAARTKVK GIFLPPESIE 120 TDRMKLEIEV EELKPSFSSE VNDKGSRLAG GEAADTEDGG SVVSLGEEKV GGVSGAEDED 180 GPPPGWEAAV TNDLGPGSSV ETIPLEIKME EVQPTKGKLG VADAEKDDDD DGPPPGWEAA 240 ATNNGGAEKE PLVKQESCKL EKGKEKECPP PCREPMAAPA PRPPLPSKPL DATSEMGQVV 300 CGSCRSLLSY PKGAKYVRCL CCQTVSFVLE AHQVGQVYCG RCAVLLMYYY GCPAVRCSNC 360 QFITQIGPHN RRPPLSEQGG TLQSQLALLR PTKSVAQ*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MSGVKEEEGE DVKEVKQEEV LRPPVPLLAG LIKQEAMECQ PVRSRFRNSG EVGGADGSFC  60
PTASVGDFLG ENRGVDPMEM KMGDELSIAE EGDDDAGLPP GWGAARTKVK GIFLPPESIE  120
TDRMKLEIEV EELKPSFSSE VNDKGSRLAG GEAADTEDGG SVVSLGEEKV GGVSGAEDED  180
GPPPGWEAAV TNDLGPGSSV ETIPLEIKME EVQPTKGKLG VADAEKDDDD DGPPPGWEAA  240
ATNNGGAEKE PLVKQESCKL EKGKEKECPP PCREPMAAPA PRPPLPSKPL DATSEMGQVV  300
CGSCRSLLSY PKGAKYVRCL CCQTVSFVLE AHQVGQVYCG RCAVLLMYYY GCPAVRCSNC  360
QFITQIGPHN RRPPLSEQGG TLQSQLALLR PTKSVAQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-34	LSD family protein