PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0898.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 262aa    MW: 28868 Da    PI: 5.636
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0898.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.73e-196861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + ++  +t+    ++ +v+r  ifdfl ++v +
  Kaladp0008s0898.1.p  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLKEVVNK 86
                         5789************************************************************************99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YGITVQTGAK  60
TVSSLHLKHC VQRYSIFDFL KEVVNKVPDY NHSSTSGEVR AISRRRKATG DELSDSDEHS  120
KRSRLQETSH GTVGGKGRGR GRGRGRGRAG HMAGPDSVQH DFEPEPSMAN LDANDNKSRD  180
LASDSKEDDD GLTNLAVGKF DLNTEFKENN SMPALAIPDN LSAHPDNLQL SLSEMDRIEF  240
NTLQLGSMNS TFDDEDYDED G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138147RGRGRGRGRG
2138148RGRGRGRGRGR
3140149RGRGRGRGRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.19e-67NF-YC family protein