PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0010s0162.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 275aa    MW: 31061.8 Da    PI: 10.029
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0010s0162.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-0888112126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y  ++C+ ++  G C+ Gd+C FaHg
  Kaladp0010s0162.1.p  88 YSPVPCPSYRL-GRCRKGDSCEFAHG 112
                          56789******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MQQQLSAVPR RQRGRRSKLN HAPLANSRPV AVPGATDLNE GEFSTDIFRM YKLKVSPCFV  60
AYRHDWARCP NYHQRESVRR RNPAAYQYSP VPCPSYRLGR CRKGDSCEFA HGLFETWLHP  120
AIYRTTPCRD GDRCLRKVCF FAHSANELRP IYTQTGHAER QRPSRLPPAA AAATPYGSGH  180
NGFVVPSSYD PSDIERLYRR HRRPGNSGYT VEVSDYPGPA MPPASAGTMS HNLDPESQRY  240
QSHPSNAVAL NPNRRTDLEL LAGRERSFQP QFGH*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.12e-47C3H family protein