PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s0068.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 522aa MW: 61192.1 Da PI: 8.4679

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s0068.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.4	1.4e-09	122	149	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++rt tC++G C+F+H+ Kaladp0011s0068.1.p 122 WKVAICGEYMRTRfnTCSRGTACNFIHC 149 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MRDLRSVGVL TYSASEVHLK TYLLELLDLF LFGWSRRPGL PFTDEEVERS YEEFYEDVHT 60 EFLKFGEIIN FKVCRNGSAH LRGNVYVHYK SLDAALLAYR SISGRYFAGK QVKCEFVGVT 120 RWKVAICGEY MRTRFNTCSR GTACNFIHCF RNPGGDYEWA DWDKPPPNYW VKKMSALFGY 180 TDEYEGRRSP SQPRDTNSQK QTTPDADRHH HSRRSRSRDR DSSNFKSHRD RYKLDDPRDA 240 TRRQRHTNEG RRHVGRKKSK DTLDRDCLDT GKLKNHNRGH SCSRRSSEGQ TRDEEFTGSS 300 DNEVDTNRDR SSEEPHGNWA SNRSKHDEVR LVRHFRGKVS RMGDSEVESD ENGGSALDQA 360 KDYDRYNSDS WCWSKNKDSI HCTIWNKGRE ETEDVVEDID DQQHGHEVGE RHKHQKQNRD 420 GCKRGDKDRI AHQLRDRDRD VNKHREGEEN GDKHQKKRRR SLEHVKESYR FSDVHADKKK 480 KTRFFEINGD ISDSNEQHQP NSPSNLKEVT VGIIDDRWVP E*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MRDLRSVGVL TYSASEVHLK TYLLELLDLF LFGWSRRPGL PFTDEEVERS YEEFYEDVHT  60
EFLKFGEIIN FKVCRNGSAH LRGNVYVHYK SLDAALLAYR SISGRYFAGK QVKCEFVGVT  120
RWKVAICGEY MRTRFNTCSR GTACNFIHCF RNPGGDYEWA DWDKPPPNYW VKKMSALFGY  180
TDEYEGRRSP SQPRDTNSQK QTTPDADRHH HSRRSRSRDR DSSNFKSHRD RYKLDDPRDA  240
TRRQRHTNEG RRHVGRKKSK DTLDRDCLDT GKLKNHNRGH SCSRRSSEGQ TRDEEFTGSS  300
DNEVDTNRDR SSEEPHGNWA SNRSKHDEVR LVRHFRGKVS RMGDSEVESD ENGGSALDQA  360
KDYDRYNSDS WCWSKNKDSI HCTIWNKGRE ETEDVVEDID DQQHGHEVGE RHKHQKQNRD  420
GCKRGDKDRI AHQLRDRDRD VNKHREGEEN GDKHQKKRRR SLEHVKESYR FSDVHADKKK  480
KTRFFEINGD ISDSNEQHQP NSPSNLKEVT VGIIDDRWVP E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	452	459	DKHQKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	4e-77	C3H family protein