PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s0068.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 497aa MW: 58223.4 Da PI: 7.825

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s0068.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.4	1.3e-09	97	124	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++rt tC++G C+F+H+ Kaladp0011s0068.2.p 97 WKVAICGEYMRTRfnTCSRGTACNFIHC 124 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MYSGPGLAWE QDEGLEFTDE EVERSYEEFY EDVHTEFLKF GEIINFKVCR NGSAHLRGNV 60 YVHYKSLDAA LLAYRSISGR YFAGKQVKCE FVGVTRWKVA ICGEYMRTRF NTCSRGTACN 120 FIHCFRNPGG DYEWADWDKP PPNYWVKKMS ALFGYTDEYE GRRSPSQPRD TNSQKQTTPD 180 ADRHHHSRRS RSRDRDSSNF KSHRDRYKLD DPRDATRRQR HTNEGRRHVG RKKSKDTLDR 240 DCLDTGKLKN HNRGHSCSRR SSEGQTRDEE FTGSSDNEVD TNRDRSSEEP HGNWASNRSK 300 HDEVRLVRHF RGKVSRMGDS EVESDENGGS ALDQAKDYDR YNSDSWCWSK NKDSIHCTIW 360 NKGREETEDV VEDIDDQQHG HEVGERHKHQ KQNRDGCKRG DKDRIAHQLR DRDRDVNKHR 420 EGEENGDKHQ KKRRRSLEHV KESYRFSDVH ADKKKKTRFF EINGDISDSN EQHQPNSPSN 480 LKEVTVGIID DRWVPE*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MYSGPGLAWE QDEGLEFTDE EVERSYEEFY EDVHTEFLKF GEIINFKVCR NGSAHLRGNV  60
YVHYKSLDAA LLAYRSISGR YFAGKQVKCE FVGVTRWKVA ICGEYMRTRF NTCSRGTACN  120
FIHCFRNPGG DYEWADWDKP PPNYWVKKMS ALFGYTDEYE GRRSPSQPRD TNSQKQTTPD  180
ADRHHHSRRS RSRDRDSSNF KSHRDRYKLD DPRDATRRQR HTNEGRRHVG RKKSKDTLDR  240
DCLDTGKLKN HNRGHSCSRR SSEGQTRDEE FTGSSDNEVD TNRDRSSEEP HGNWASNRSK  300
HDEVRLVRHF RGKVSRMGDS EVESDENGGS ALDQAKDYDR YNSDSWCWSK NKDSIHCTIW  360
NKGREETEDV VEDIDDQQHG HEVGERHKHQ KQNRDGCKRG DKDRIAHQLR DRDRDVNKHR  420
EGEENGDKHQ KKRRRSLEHV KESYRFSDVH ADKKKKTRFF EINGDISDSN EQHQPNSPSN  480
LKEVTVGIID DRWVPE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	434	DKHQKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	5e-87	C3H family protein