PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1050.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 224aa    MW: 24565.9 Da    PI: 5.2341
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1050.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.72.3e-55331351100
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd
  Kaladp0011s1050.1.p  33 QLQMFWTYQrqeIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 122
                          89*****998899***************************************************************************** PP

                NF-YC  88 ifdflvdivprde 100
                          ifdflvdivpr+e
  Kaladp0011s1050.1.p 123 IFDFLVDIVPRSE 135
                          **********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MDNNPPPAPP LPQQQQQLQP APLQHLLQQQ QQQLQMFWTY QRQEIEHVND FKNHQLPLAR  60
IKKIMKADED VRMISAEAPI LFAKACELFI LELTIRSWLH AEENKRRTLQ KNDIAAAITR  120
TDIFDFLVDI VPRSEDDPSA TAAAGLPLPL PLPVPATASG VPFYYPPVVQ PAAAGMMTIG  180
RPAAAIDPSA AGVYSQPWQS VWAHPTADGG SGDQGRNLDG AQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.23e-84NF-YC family protein