PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0013s0025.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 346aa MW: 38557.9 Da PI: 6.581

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0013s0025.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.2e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d++ q+G+g +W + ++++g++R++k+c++rw++yl Kaladp0013s0025.1.p 14 KGPWSPEEDAKLKDYIDQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36	1.6e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed l+ + G++ W+ Ia+ ++ gRt++++k++w++ Kaladp0013s0025.1.p 69 GGFSEDEDHLICSLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKDYID QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEDEDHLIC SLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKRKLLGK 120 QRKEQNARRA SLLKQQVVKE ESTYYEPAHP YMVHANQQGE LMSIIHHTNQ ECFSSVSPNM 180 VAVPYPNQQV YAYAEQQLEN TNNSLNHQYT AQEYLYGEAY HTNISSEFYS SDSGLLPNLE 240 RAGDTDPNLL LDGPINNFSS MERQLFEDFL FGNNQLGFMN MVAGSGASMT SSSGGNAGTS 300 PMESTTSTWG DQTATALLPS SSSFELDFQQ WSGNNGIHVA ASIQH*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKDYID QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEDEDHLIC SLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKRKLLGK  120
QRKEQNARRA SLLKQQVVKE ESTYYEPAHP YMVHANQQGE LMSIIHHTNQ ECFSSVSPNM  180
VAVPYPNQQV YAYAEQQLEN TNNSLNHQYT AQEYLYGEAY HTNISSEFYS SDSGLLPNLE  240
RAGDTDPNLL LDGPINNFSS MERQLFEDFL FGNNQLGFMN MVAGSGASMT SSSGGNAGTS  300
PMESTTSTWG DQTATALLPS SSSFELDFQQ WSGNNGIHVA ASIQH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	1e-76	MYB family protein