PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0015s0107.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 430aa MW: 46765 Da PI: 8.1541

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0015s0107.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.6e-12	51	76	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C++++rtG+C +G rC+F+H++ Kaladp0015s0107.1.p 51 GVADCDHYMRTGYCGFGIRCRFNHPQ 76 7899********************97 PP
2	zf-CCCH	37.6	3.6e-12	96	122	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G +CkF+H++ Kaladp0015s0107.1.p 96 PGEPVCQFYMKTGTCKFGRSCKFHHPK 122 5789*********************96 PP
3	zf-CCCH	37.9	3e-12	144	168	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+++++tG+Ck+G +CkF+H++ Kaladp0015s0107.1.p 144 EIECSYYLKTGQCKFGVTCKFHHPQ 168 568********************97 PP
4	zf-CCCH	37.9	2.9e-12	277	303	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG CkyG +Ck++H++ Kaladp0015s0107.1.p 277 PGEPECQYYLRTGDCKYGLSCKYHHPK 303 5799*********************96 PP
5	zf-CCCH	42.2	1.3e-13	323	349	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++te+Crf+ +tG+Ck+G++CkF H++ Kaladp0015s0107.1.p 323 PGTEPCRFYIQTGYCKFGSTCKFDHPM 349 68***********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MDMYGRGQER IGSESDRNPV EWDPAGGVTG LEESMMRMGL RGAETYPERP GVADCDHYMR 60 TGYCGFGIRC RFNHPQDRSK VVVAMRYGGG EYPERPGEPV CQFYMKTGTC KFGRSCKFHH 120 PKNGSGSVSQ VPLNIFGYPL RPGEIECSYY LKTGQCKFGV TCKFHHPQPA GMPMPPTSAP 180 TFYPAVQSSP EQFGESSTQW KVDRTLLPGS YVQGSYGPML IPPGVVPVPS WAPYSGSVGS 240 VPSTAAESAA VPYPPPMLPP YAGTPSGQVV QAFPERPGEP ECQYYLRTGD CKYGLSCKYH 300 HPKQWNIPSA NYALSPLGLP LRPGTEPCRF YIQTGYCKFG STCKFDHPMD TMGYNLVPPS 360 PSNIPVPQHP IQTTPLLPPP FSTTSDLIPS SNEPPYPGIT TSSSSGALLP HISSKATRQG 420 GEPVRRNSS*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MDMYGRGQER IGSESDRNPV EWDPAGGVTG LEESMMRMGL RGAETYPERP GVADCDHYMR  60
TGYCGFGIRC RFNHPQDRSK VVVAMRYGGG EYPERPGEPV CQFYMKTGTC KFGRSCKFHH  120
PKNGSGSVSQ VPLNIFGYPL RPGEIECSYY LKTGQCKFGV TCKFHHPQPA GMPMPPTSAP  180
TFYPAVQSSP EQFGESSTQW KVDRTLLPGS YVQGSYGPML IPPGVVPVPS WAPYSGSVGS  240
VPSTAAESAA VPYPPPMLPP YAGTPSGQVV QAFPERPGEP ECQYYLRTGD CKYGLSCKYH  300
HPKQWNIPSA NYALSPLGLP LRPGTEPCRF YIQTGYCKFG STCKFDHPMD TMGYNLVPPS  360
PSNIPVPQHP IQTTPLLPPP FSTTSDLIPS SNEPPYPGIT TSSSSGALLP HISSKATRQG  420
GEPVRRNSS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-148	C3H family protein