PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0018s0301.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 466aa MW: 49182 Da PI: 8.6204

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0018s0301.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39	1.3e-12	45	69	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG+C yG+rC+F+H+p Kaladp0018s0301.1.p 45 EANCKYYLRTGFCGYGARCRFNHPP 69 689********************97 PP
2	zf-CCCH	38.4	2e-12	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ tGtCk+G++Ck++H++ Kaladp0018s0301.1.p 91 QPVCKYYMMTGTCKFGSSCKYHHPR 115 689********************96 PP
3	zf-CCCH	36.6	7.7e-12	134	159	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+CkyG +CkF+H++ Kaladp0018s0301.1.p 134 GEKECSYYVKTGQCKYGVTCKFHHPQ 159 7899********************97 PP
4	zf-CCCH	40	6.4e-13	300	326	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Kaladp0018s0301.1.p 300 PGQPECQYYMKTGDCKYGSSCRYHHPP 326 5789*********************97 PP
5	zf-CCCH	33.8	5.9e-11	346	369	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ffa++G CkyG+ Ck+ H+ Kaladp0018s0301.1.p 346 APPCIFFAQYGVCKYGSACKYDHS 369 689********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MEGYGQSNPG AGGSQSDPGG EGYAEESTWQ VGLGGQELYP ERPNEANCKY YLRTGFCGYG 60 ARCRFNHPPD RTMVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK YHHPRHGGGP 120 HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP ALGISPGPAP 180 RLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYIQG PYAPMFVPHG MVPVPGWGHF 240 PAHVSPASPT PQPAIGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS QKDRGLPERP 300 GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAPPCI FFAQYGVCKY 360 GSACKYDHSS RTGSLSYSPS ASSLTDVPVA PLPVGSSTGT LAASSSSSDL HQEIAAVSRK 420 DSSPTPQISS SATPTSTSLS SPPPKSQPTP HSTGSTSSKE AHSSS*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MEGYGQSNPG AGGSQSDPGG EGYAEESTWQ VGLGGQELYP ERPNEANCKY YLRTGFCGYG  60
ARCRFNHPPD RTMVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK YHHPRHGGGP  120
HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP ALGISPGPAP  180
RLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYIQG PYAPMFVPHG MVPVPGWGHF  240
PAHVSPASPT PQPAIGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS QKDRGLPERP  300
GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAPPCI FFAQYGVCKY  360
GSACKYDHSS RTGSLSYSPS ASSLTDVPVA PLPVGSSTGT LAASSSSSDL HQEIAAVSRK  420
DSSPTPQISS SATPTSTSLS SPPPKSQPTP HSTGSTSSKE AHSSS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-124	C3H family protein