PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0018s0301.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 394aa MW: 41376.6 Da PI: 9.1182

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0018s0301.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.7	1.6e-12	19	43	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ tGtCk+G++Ck++H++ Kaladp0018s0301.2.p 19 QPVCKYYMMTGTCKFGSSCKYHHPR 43 689********************96 PP
2	zf-CCCH	36.9	6.2e-12	62	87	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+CkyG +CkF+H++ Kaladp0018s0301.2.p 62 GEKECSYYVKTGQCKYGVTCKFHHPQ 87 7899********************97 PP
3	zf-CCCH	40.3	5.2e-13	228	254	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Kaladp0018s0301.2.p 228 PGQPECQYYMKTGDCKYGSSCRYHHPP 254 5789*********************97 PP
4	zf-CCCH	34	4.8e-11	274	297	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ffa++G CkyG+ Ck+ H+ Kaladp0018s0301.2.p 274 APPCIFFAQYGVCKYGSACKYDHS 297 689********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MVVGALRLGG GEYPQRVGQP VCKYYMMTGT CKFGSSCKYH HPRHGGGPHV SLNYLGYPLR 60 PGEKECSYYV KTGQCKYGVT CKFHHPQPTN IPVTTASPAL GISPGPAPRL YPQVQPSSIS 120 GAQPYGVMPG NWQVARPPAM LPGPYIQGPY APMFVPHGMV PVPGWGHFPA HVSPASPTPQ 180 PAIGSSPLYG ITQLSSSAPE YTGPYSTVSL SVGASSSSQK DRGLPERPGQ PECQYYMKTG 240 DCKYGSSCRY HHPPELIRPK TTPEPVNLPI RPGAPPCIFF AQYGVCKYGS ACKYDHSSRT 300 GSLSYSPSAS SLTDVPVAPL PVGSSTGTLA ASSSSSDLHQ EIAAVSRKDS SPTPQISSSA 360 TPTSTSLSSP PPKSQPTPHS TGSTSSKEAH SSS*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MVVGALRLGG GEYPQRVGQP VCKYYMMTGT CKFGSSCKYH HPRHGGGPHV SLNYLGYPLR  60
PGEKECSYYV KTGQCKYGVT CKFHHPQPTN IPVTTASPAL GISPGPAPRL YPQVQPSSIS  120
GAQPYGVMPG NWQVARPPAM LPGPYIQGPY APMFVPHGMV PVPGWGHFPA HVSPASPTPQ  180
PAIGSSPLYG ITQLSSSAPE YTGPYSTVSL SVGASSSSQK DRGLPERPGQ PECQYYMKTG  240
DCKYGSSCRY HHPPELIRPK TTPEPVNLPI RPGAPPCIFF AQYGVCKYGS ACKYDHSSRT  300
GSLSYSPSAS SLTDVPVAPL PVGSSTGTLA ASSSSSDLHQ EIAAVSRKDS SPTPQISSSA  360
TPTSTSLSSP PPKSQPTPHS TGSTSSKEAH SSS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-101	C3H family protein