PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0018s0301.3.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 416aa MW: 43775.5 Da PI: 8.9686

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0018s0301.3.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.7e-12	41	65	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ tGtCk+G++Ck++H++ Kaladp0018s0301.3.p 41 QPVCKYYMMTGTCKFGSSCKYHHPR 65 689********************96 PP
2	zf-CCCH	36.8	6.7e-12	84	109	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+CkyG +CkF+H++ Kaladp0018s0301.3.p 84 GEKECSYYVKTGQCKYGVTCKFHHPQ 109 7899********************97 PP
3	zf-CCCH	40.2	5.6e-13	250	276	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Kaladp0018s0301.3.p 250 PGQPECQYYMKTGDCKYGSSCRYHHPP 276 5789*********************97 PP
4	zf-CCCH	34	5.1e-11	296	319	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ffa++G CkyG+ Ck+ H+ Kaladp0018s0301.3.p 296 APPCIFFAQYGVCKYGSACKYDHS 319 689********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MMKCLTEFVG AANVRIMLSD CSQVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK 60 YHHPRHGGGP HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP 120 ALGISPGPAP RLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYIQG PYAPMFVPHG 180 MVPVPGWGHF PAHVSPASPT PQPAIGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS 240 QKDRGLPERP GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAPPCI 300 FFAQYGVCKY GSACKYDHSS RTGSLSYSPS ASSLTDVPVA PLPVGSSTGT LAASSSSSDL 360 HQEIAAVSRK DSSPTPQISS SATPTSTSLS SPPPKSQPTP HSTGSTSSKE AHSSS*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MMKCLTEFVG AANVRIMLSD CSQVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK  60
YHHPRHGGGP HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP  120
ALGISPGPAP RLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYIQG PYAPMFVPHG  180
MVPVPGWGHF PAHVSPASPT PQPAIGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS  240
QKDRGLPERP GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAPPCI  300
FFAQYGVCKY GSACKYDHSS RTGSLSYSPS ASSLTDVPVA PLPVGSSTGT LAASSSSSDL  360
HQEIAAVSRK DSSPTPQISS SATPTSTSLS SPPPKSQPTP HSTGSTSSKE AHSSS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-101	C3H family protein