PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0020s0016.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28095.7 Da    PI: 7.2384
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0020s0016.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ien   rqvtfskRr g+lKKA ELSvLCdaevaviifs+tgkl+++ss
  Kaladp0020s0016.1.p  9 KKIENINSRQVTFSKRRSGLLKKARELSVLCDAEVAVIIFSNTGKLFDFSS 59
                         68***********************************************96 PP
2K-box70.84.2e-24801755100
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          + +++ + +++  ++ l+ Lk+e+ nLq ++RhllG++L+ Lsl+eLqqLe+qL ++   ++++K+++ll+q+e+++ +e+ +  en++L
  Kaladp0020s0016.1.p  80 TVEDKPKVNHQLEKEPLDILKEELANLQLKHRHLLGNELNGLSLNELQQLEDQLTHGFLCVKERKEQVLLQQLEQSRLQEQHTTMENETL 169
                          4444778899999999************************************************************************** PP

                K-box  95 rkklee 100
                          r++++e
  Kaladp0020s0016.1.p 170 RQQVQE 175
                          ***987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MGRGKIEIKK IENINSRQVT FSKRRSGLLK KARELSVLCD AEVAVIIFSN TGKLFDFSSH  60
GMKGTIARYS KCQDSSETST VEDKPKVNHQ LEKEPLDILK EELANLQLKH RHLLGNELNG  120
LSLNELQQLE DQLTHGFLCV KERKEQVLLQ QLEQSRLQEQ HTTMENETLR QQVQELKAFL  180
PPAEQPVPSF LTYYPSGLRN APKKDSVESE FPTENEDSDT TLHLGPPSSV SRKRKASDRE  240
SHSNSSGC*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-51MIKC_MADS family protein