PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0022s0016.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 289aa    MW: 32031.9 Da    PI: 8.3097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0022s0016.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.3e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+ Ed ll ++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kaladp0022s0016.1.p 14 RGPWTPKEDSLLTNYINSHGEGHWRSLPKQAGLLRCGKSCRLRWMNYL 61
                         89******************************99************97 PP
2Myb_DNA-binding50.83.7e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w++
  Kaladp0022s0016.1.p  67 RGNITAQEDDLIIRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                          7999******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MGRAPCCSKV GLHRGPWTPK EDSLLTNYIN SHGEGHWRSL PKQAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TAQEDDLIIR LHALLGNRWS LIAGRLPGRT DNEIKNYWNT RLSKKIPSPP  120
KNTKRPKKPS PLVPATASKL LTEPPVEMET KHMIHQPKAV RIGPLNRNVS GLLTSSESNN  180
DTYTSSVSGE INMSSNYNSN SSEGEVDHHA NFAAAENGSA PWSTGDMYNS GIYVDDGTKA  240
PSFSDQLLGY GDEGNNTVWE KLYDEYLQLT NAGYGVELDQ SETQHLLI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-65MYB family protein