PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0004.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 389aa    MW: 42897.5 Da    PI: 7.0936
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0004.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17.2e-09138158526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+ f++ G C++Gd+C FaHg
  Kaladp0024s0004.1.p 138 ACPEFRK-GSCRRGDTCEFAHG 158
                          7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    
MMIGELPRTH PTVQIPPVWD PYEDPTAEIN SPFPVNGSSP SSGPFGSPDY SNPFSVPDSF  60
GSRQGYVLSN EPEPDMFDDD FSDLPLDAFS GDNFRMYDFK VRRCARGRSH DWTECPFAHP  120
GEKARRRDPR RYGYSGTACP EFRKGSCRRG DTCEFAHGVF ECWLHPDRYR TQACKDGQGC  180
RRRICFFAHS PEQLRVMSLQ SPRKGLVSSN SADSYDGSPL RRSSFDSYIG GICNNNKASS  240
FGSSSPPTSP PSSPPPLSSS YNSVHELVSN MRNLQLAKAK LSTGSVWGGM SSMGSPRGSS  300
NLRPGFLSLP TTPTRIPARS GLAQFEQWDS NNNSIRACEE EPVMERVESG RDLRAKIYAK  360
LSKENSFGPV NGSQLTDPDV GWISDLVE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.17e-98C3H family protein