PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0460.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MIKC_MADS

Protein Properties

Length: 356aa MW: 39925.9 Da PI: 6.2713

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0460.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.8	5.8e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s Kaladp0024s0460.1.p 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	17.3	2e-07	110	175	9	74
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 + +++ e+lqqel L+ +++ q+++R + + L+ s+ eL+ e+++ + ++ i ++K++l+ Kaladp0024s0460.1.p 110 AVNSNVEELQQELISLQHQLKIAQEKLRIYEPNPLDFSSMAELEACEKNILDIMSDISERKKQLMN 175 567899**********************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVLTRY INLPDRDRGG ISLNTEYLIT TLKTLRAEND VALQLANPGA VNSNVEELQQ 120 ELISLQHQLK IAQEKLRIYE PNPLDFSSMA ELEACEKNIL DIMSDISERK KQLMNVRNQH 180 CSNFDPSSYM QMYLDGQDGV PVSTTFDNEV INWLPKNESN SNPIFVGSDP SASSISMRNH 240 TSSTIYDPMS HGSEIAMDHK NMSVCHITNS TFEQMSPWHQ SYTSAELLTA FMSPSAFPQI 300 KEIGGPSMQP MMTGQQGEAT SSCQHHQATS AGENESATYD HHQPAQLPRH PIHGE*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVLTRY INLPDRDRGG ISLNTEYLIT TLKTLRAEND VALQLANPGA VNSNVEELQQ  120
ELISLQHQLK IAQEKLRIYE PNPLDFSSMA ELEACEKNIL DIMSDISERK KQLMNVRNQH  180
CSNFDPSSYM QMYLDGQDGV PVSTTFDNEV INWLPKNESN SNPIFVGSDP SASSISMRNH  240
TSSTIYDPMS HGSEIAMDHK NMSVCHITNS TFEQMSPWHQ SYTSAELLTA FMSPSAFPQI  300
KEIGGPSMQP MMTGQQGEAT SSCQHHQATS AGENESATYD HHQPAQLPRH PIHGE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	2e-92	MIKC_MADS family protein