PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0824.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 447aa MW: 48940.2 Da PI: 8.4162

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0824.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.6e-11	53	79	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Kaladp0024s0824.1.p 53 PGEPDCSYYIRTGLCRFGATCRFNHPP 79 5789*********************97 PP
2	zf-CCCH	38.8	1.6e-12	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Kaladp0024s0824.1.p 100 QPECQYYLKTGTCKFGATCKFHHPR 124 799********************96 PP
3	zf-CCCH	39.1	1.3e-12	147	170	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG+Ck+G++CkF+H++ Kaladp0024s0824.1.p 147 NECSYYLRTGECKFGSTCKFHHPQ 170 68********************97 PP
4	zf-CCCH	38.6	1.8e-12	307	333	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ Kaladp0024s0824.1.p 307 PGQPECQFYMKTGDCKFGAVCKFHHPR 333 5789*********************96 PP
5	zf-CCCH	37.6	3.7e-12	354	379	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF H++ Kaladp0024s0824.1.p 354 GEPLCVFYSRYGICKFGPSCKFDHPM 379 789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MEYDSGVSMS RPPPPLTDGS SSVPASTFNQ DAMWQLNLRS SETMDFVPYP ERPGEPDCSY 60 YIRTGLCRFG ATCRFNHPPN RTMIIANARM KGEFPERVGQ PECQYYLKTG TCKFGATCKF 120 HHPRDKAGIA GRVTLNILGY PIRPNENECS YYLRTGECKF GSTCKFHHPQ PSNMMVSVRG 180 SPAYPSVNSP TNPSPQSYPG GVSNWPMSRA SFIPSPQWQG ASSYAPMILP PGVVSIPGWN 240 AYSGQMGSMS STEGQHQTVG NNQVYGTARQ SEATNPGSQG AYSQYRAGAV PIGMYALPRD 300 NVFPERPGQP ECQFYMKTGD CKFGAVCKFH HPRERVIPAP DCMLSPLGLP LRQGEPLCVF 360 YSRYGICKFG PSCKFDHPME IFRYNLPISS STDLPVRRFL GSSSGSAALS LSSDGLVEAG 420 SAKPRRLSLS ETRQMPSGDD DVNREG*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MEYDSGVSMS RPPPPLTDGS SSVPASTFNQ DAMWQLNLRS SETMDFVPYP ERPGEPDCSY  60
YIRTGLCRFG ATCRFNHPPN RTMIIANARM KGEFPERVGQ PECQYYLKTG TCKFGATCKF  120
HHPRDKAGIA GRVTLNILGY PIRPNENECS YYLRTGECKF GSTCKFHHPQ PSNMMVSVRG  180
SPAYPSVNSP TNPSPQSYPG GVSNWPMSRA SFIPSPQWQG ASSYAPMILP PGVVSIPGWN  240
AYSGQMGSMS STEGQHQTVG NNQVYGTARQ SEATNPGSQG AYSQYRAGAV PIGMYALPRD  300
NVFPERPGQP ECQFYMKTGD CKFGAVCKFH HPRERVIPAP DCMLSPLGLP LRQGEPLCVF  360
YSRYGICKFG PSCKFDHPME IFRYNLPISS STDLPVRRFL GSSSGSAALS LSSDGLVEAG  420
SAKPRRLSLS ETRQMPSGDD DVNREG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-177	C3H family protein