PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0900.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 224aa    MW: 26007.5 Da    PI: 8.5955
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0900.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-1965117456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++++t+eq+  Le  Fe++r++ ++++++LA++lgL+ rqV vWFqNrRa+ k
  Kaladp0024s0900.1.p  65 KRKLTEEQTALLELSFENDRKLETDRKKRLAAELGLEPRQVMVWFQNRRARLK 117
                          4589***********************************************87 PP
2HD-ZIP_I/II100.21.8e-3264155293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+l++eq +lLE sFe+++kLe++rK++la eLgl+prqv vWFqnrRAR k ++lE ++++L+++++ + +++++Le++   L ++l
  Kaladp0024s0900.1.p  64 RKRKLTEEQTALLELSFENDRKLETDRKKRLAAELGLEPRQVMVWFQNRRARLKCQKLEDEFAKLRSSHNDVLAQKSQLETQIFVLDQKL 153
                          8**********************************************************************************9999999 PP

          HD-ZIP_I/II  92 ke 93 
                          k+
  Kaladp0024s0900.1.p 154 KN 155
                          86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MAYCQRSRYG LEKYDEGDYS MLPTSQQLPC HTAEVEFTIP SGEKKQIRRR RKKNKGDENG  60
SVLRKRKLTE EQTALLELSF ENDRKLETDR KKRLAAELGL EPRQVMVWFQ NRRARLKCQK  120
LEDEFAKLRS SHNDVLAQKS QLETQIFVLD QKLKNVEKEL KGLSIWEEVL PAVHSTPTTS  180
SLSAKNQPID GSMFSQESSM QQYLENGFCF QLEDYSNMLT WFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14867RRRRKKNKGDENGSVLRKRK
24968RRRRKKNKGDENGSVLRKRK
35069RRRRKKNKGDENGSVLRKRK
45170RRRRKKNKGDENGSVLRKRK
56368LRKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.17e-37HD-ZIP family protein