PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0032s0404.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 1670aa MW: 181419 Da PI: 4.7791

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0032s0404.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.5e-06	1644	1667	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 t+ C++++ G Ck G++C+ H++ Kaladp0032s0404.1.p 1644 TRVCDYYMS-GRCKKGASCNWLHPQ 1667 8997777.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1670 aa Download sequence
MADDDEVAAG DHSPRRFQEA QGPAPEQLTN QERRPVSEEI VVEELEAVAG SEVSEFGGSE 60 VPAELGAVCA ADGQAGAEIG GSVGKDEAAV ESNESGVAME VEPCNAGEGG VGSNCCPSEL 120 EGAEPEKYDQ AEDVKSTAFG IGTESQNEPD SEKLHLDVKS EGVVAAEDYH MNDAFEEKTE 180 ESEKNVSVEQ CEASTVCGGM EQVDDSKKTV KEEGVEENVA GISDLIGGDP TGDVGYEHKG 240 ELPVAVPEIV IGEQETTLLS TSRPIVESEQ VALAEDDLME DASTSSDEDN GDHHVTELVE 300 DIVHSELMND QESPSSREVN SVDSAAQGKV DDILSVAEQQ KHVALSVGLD HIDQSDKPKD 360 EGGDEDAEMR TEEENIENEE KVKEDLSAVP DLDFSLQNVE LDPTIGEDEI DEEFVGGEDP 420 SIADEVETQI DITDAEKGNA PRKRGRKPVK AASTKKTEED VCFICFDGGD LVVCDRRGCP 480 KVYHPSCVNR DEAFFRSKGR WNCGWHLCSI CEKNAQYMCF TCTFSLCKAC IKSTVFYSVR 540 GNKGFCDNCM KTVNLIESNE QGNNEAKFDF DDKNCWEYLF KDYWIDVKGK LQLTSEELAQ 600 AKNPLKGSEA VTSKQESADE TYNIDNNADS GSNNSSGNAV ASTPKKKKSK KRSKSVGKGE 660 DSASGSDSSG NGNKSKRKKT KKQVKSLRKR GSSGNTSEVG IDSGSKWASS ELLKFVMHMR 720 NGDASVLSQF EVQELLLEYI KTNKLRDPRR KSQIICDAML KGLFRKQRVG HFEMLKLLEL 780 HFLMREDQQN DFHGSSVDNE SSPLDETRKA DVSAKTSKDK KRKMHKKRFG RGTPTNIEDY 840 AAIDIHNVSL VFLRRNLMEI LLEDVEKFQE KVVGAFVRIR ITGINQIQDM YRLVQIVGTT 900 KAPVPYKVGK RTTDINLEIQ NLNKKEVVSM DIISNQEFTE DECNRLRQSI KCGLIPPLTV 960 GYILEKAMDL QAARVNDWLE TEMVRLSHLC DRASDMGRRK ELRENVEKLQ NLKKPEERQR 1020 RLEQIPEVHS DPKMDPSYES EEDEVEAEDR KQENFSRPMG SSFSRQGKET LSPRKGSSVS 1080 SDSWSGAKGH SVSGMNRELG RSLSVKGEDT SLTGELNRDI MSLKRSNEHE SITRDRQKGP 1140 YSSPLVGGNS YSAVASEPVS GVVSDTQTAA TVNESEKIWH YKDPSGKVQG PFSLVQLKKW 1200 NTTGFFPKDL TIWRTSENED DGILLLDALA GKFQKETKFN ENQSNKSHNV QIGHSSLPHS 1260 ARSALNGSMG NSASPSQIST VGRTSLSVDV PMANAAARGS GFDSRNDSTN LPSPTPNQTP 1320 KGSTEGQAFV DRVSSFSRSA IGSLSADSTQ LDRLTATSVA NAFRSTYNQQ PTSTGYHLQQ 1380 PDPSAASVNS GVESRNSAAA VPSIMQSVAL QQPGHSGSNN QIPFSASNTY NQWGNPTAVS 1440 TENPGGSFPN QGFLGMPVST AWRPPTLPVN QPGAQAVVLP DQSWRAVPGN PNMGWGGVLQ 1500 ANANVSWTPT GQVAPQVNPN WAVQGMGPVT GSATAGWMAA QGHATPGFVA PGNNQAGAIM 1560 NPSWAGGAVV NANSNQAWAA AGHGSMPNSA APNNNSQGSW VNGQNGSERY ANDRTGGGSS 1620 GRQWNNRRGE GSYHQRGGSG AGPTRVCDYY MSGRCKKGAS CNWLHPQRQ*

Sequence ? help Back to Top

Protein Sequence Length: 1670 aa Download sequence

MADDDEVAAG DHSPRRFQEA QGPAPEQLTN QERRPVSEEI VVEELEAVAG SEVSEFGGSE  60
VPAELGAVCA ADGQAGAEIG GSVGKDEAAV ESNESGVAME VEPCNAGEGG VGSNCCPSEL  120
EGAEPEKYDQ AEDVKSTAFG IGTESQNEPD SEKLHLDVKS EGVVAAEDYH MNDAFEEKTE  180
ESEKNVSVEQ CEASTVCGGM EQVDDSKKTV KEEGVEENVA GISDLIGGDP TGDVGYEHKG  240
ELPVAVPEIV IGEQETTLLS TSRPIVESEQ VALAEDDLME DASTSSDEDN GDHHVTELVE  300
DIVHSELMND QESPSSREVN SVDSAAQGKV DDILSVAEQQ KHVALSVGLD HIDQSDKPKD  360
EGGDEDAEMR TEEENIENEE KVKEDLSAVP DLDFSLQNVE LDPTIGEDEI DEEFVGGEDP  420
SIADEVETQI DITDAEKGNA PRKRGRKPVK AASTKKTEED VCFICFDGGD LVVCDRRGCP  480
KVYHPSCVNR DEAFFRSKGR WNCGWHLCSI CEKNAQYMCF TCTFSLCKAC IKSTVFYSVR  540
GNKGFCDNCM KTVNLIESNE QGNNEAKFDF DDKNCWEYLF KDYWIDVKGK LQLTSEELAQ  600
AKNPLKGSEA VTSKQESADE TYNIDNNADS GSNNSSGNAV ASTPKKKKSK KRSKSVGKGE  660
DSASGSDSSG NGNKSKRKKT KKQVKSLRKR GSSGNTSEVG IDSGSKWASS ELLKFVMHMR  720
NGDASVLSQF EVQELLLEYI KTNKLRDPRR KSQIICDAML KGLFRKQRVG HFEMLKLLEL  780
HFLMREDQQN DFHGSSVDNE SSPLDETRKA DVSAKTSKDK KRKMHKKRFG RGTPTNIEDY  840
AAIDIHNVSL VFLRRNLMEI LLEDVEKFQE KVVGAFVRIR ITGINQIQDM YRLVQIVGTT  900
KAPVPYKVGK RTTDINLEIQ NLNKKEVVSM DIISNQEFTE DECNRLRQSI KCGLIPPLTV  960
GYILEKAMDL QAARVNDWLE TEMVRLSHLC DRASDMGRRK ELRENVEKLQ NLKKPEERQR  1020
RLEQIPEVHS DPKMDPSYES EEDEVEAEDR KQENFSRPMG SSFSRQGKET LSPRKGSSVS  1080
SDSWSGAKGH SVSGMNRELG RSLSVKGEDT SLTGELNRDI MSLKRSNEHE SITRDRQKGP  1140
YSSPLVGGNS YSAVASEPVS GVVSDTQTAA TVNESEKIWH YKDPSGKVQG PFSLVQLKKW  1200
NTTGFFPKDL TIWRTSENED DGILLLDALA GKFQKETKFN ENQSNKSHNV QIGHSSLPHS  1260
ARSALNGSMG NSASPSQIST VGRTSLSVDV PMANAAARGS GFDSRNDSTN LPSPTPNQTP  1320
KGSTEGQAFV DRVSSFSRSA IGSLSADSTQ LDRLTATSVA NAFRSTYNQQ PTSTGYHLQQ  1380
PDPSAASVNS GVESRNSAAA VPSIMQSVAL QQPGHSGSNN QIPFSASNTY NQWGNPTAVS  1440
TENPGGSFPN QGFLGMPVST AWRPPTLPVN QPGAQAVVLP DQSWRAVPGN PNMGWGGVLQ  1500
ANANVSWTPT GQVAPQVNPN WAVQGMGPVT GSATAGWMAA QGHATPGFVA PGNNQAGAIM  1560
NPSWAGGAVV NANSNQAWAA AGHGSMPNSA APNNNSQGSW VNGQNGSERY ANDRTGGGSS  1620
GRQWNNRRGE GSYHQRGGSG AGPTRVCDYY MSGRCKKGAS CNWLHPQRQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	645	685	KKKKSKKRSKSVGKGEDSASGSDSSGNGNKSKRKKTKKQVK
2	647	687	KKKKSKKRSKSVGKGEDSASGSDSSGNGNKSKRKKTKKQVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	1e-174	C3H family protein