PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0036s0294.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 262aa    MW: 27445.8 Da    PI: 8.1686
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0036s0294.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601301e-40191181100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++C+++pyf  ++p+kf +vhk+FGasnv+kll ++pe +r da++slvyeA++r+rdPvyG++g i +lqqql++l
  Kaladp0036s0294.1.p  19 PCAACKLLRRRCAEECPFSPYFSPHEPHKFLAVHKVFGASNVSKLLLEVPEGQRADAANSLVYEANVRLRDPVYGCMGAIAALQQQLHSL 108
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +a+l+++++e
  Kaladp0036s0294.1.p 109 QAQLDAVRSE 118
                          *****99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MEKRVHLLGP AVALNKVTPC AACKLLRRRC AEECPFSPYF SPHEPHKFLA VHKVFGASNV  60
SKLLLEVPEG QRADAANSLV YEANVRLRDP VYGCMGAIAA LQQQLHSLQA QLDAVRSEIL  120
KHDIIRSQAA AAAAPSSSAP TVTITTNNSS TITVAAAGAD SSNNNISIST HHHHHLIRSP  180
SSGGTLSAVA MLPPSEQPQR PLTPPLHPAA SAQSAPSNSS SSSSTSGTAV TISSLYSTQQ  240
PNTSSSIGFS TNNNDGYMCF D*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-56LBD family protein