PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0416.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 398aa    MW: 43711.6 Da    PI: 8.0105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0416.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08129149526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+ f+r G C++Gd+C FaHg
  Kaladp0039s0416.1.p 129 VCPEFRR-GGCSRGDSCEFAHG 149
                          7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    
MSSTVCAEQV QKFHSSQQKS HHLHNIDVPP RKLLSRRGAA ARAASFHEDS SSSPKVAEEA  60
LFRKFLPYNS GFDDDDDDPY SSDHFRMFEF KIRRCTRSRS HDWTDCPFAH PGEKARRRDP  120
RRFAYSGTVC PEFRRGGCSR GDSCEFAHGV FECWLHPARY RTEACKDGKS CKRKVCFFAH  180
TPRQLRVLPP SEDSPVSRKP RKTNPSSAAV SGCNHCCVFC LHQQNANNNN NSVINPNSPT  240
STLLSFSPPL SPIKNRSPVE PPFSRFSGCN NGSLSYDEAL AELVASLDAM NVVEGSLAGS  300
GCYPGLGFGG ESEIYSPIMN HHQPQQQSQF VLSPSTPQQQ SFSSSRIFGP AAGRSSLFDP  360
ISPTSLPNYT AGFTTGAAAS SCVDDSPDIA WVNDLLM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-80C3H family protein