PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0516.4.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 340aa MW: 37287.7 Da PI: 6.285

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0516.4.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	45.5	1.2e-14	259	283	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd C+FaHg Kaladp0039s0516.4.p 259 KTELCNKWQETGSCPYGDHCQFAHG 283 8***********************8 PP
2	zf-CCCH	17.9	5.5e-06	296	320	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H Kaladp0039s0516.4.p 296 YKTEVCRMVLAGDPCPYGHRCHFRH 320 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MENDSHGSYD FVSQDSEVYK SSLYSMFSTN RKQSVSPSDS STTTNSNTSQ SPNDSYSDEK 60 ITAATMNQAL SFIVQNHQDL LNCHNLRLNH LLEATREAEA LRSENASLRV LNRDLIDRLA 120 LMFQSAHPPR SLSPDFQELP LMQGFAGLCI GGDNAGGRDG FVESPSPTSV MENNVMEMPT 180 EPVRVALPKS ISVRSDGYLK TNPSCGKSGA AGGGDSRLRS STRVQAADSV SGKQKVYVQG 240 GKKEGEAVEL EVYNQGMVKT ELCNKWQETG SCPYGDHCQF AHGIEELRPV LRHPRYKTEV 300 CRMVLAGDPC PYGHRCHFRH ALTEQEKLMM SALAELATL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	8e-69	C3H family protein