PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0285.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 303aa    MW: 33061.6 Da    PI: 9.3546
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0285.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.91.5e-192369349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +e ksnr+vtfskRr  ++ KA+EL++L +a va++ifs+ gk+y +
  Kaladp0040s0285.1.p 23 VEKKSNRNVTFSKRRSSLFEKASELCTLSGAHVAIMIFSPAGKIYSF 69
                         799******************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MATAAPPKKK RPQGGKKIEM KLVEKKSNRN VTFSKRRSSL FEKASELCTL SGAHVAIMIF  60
SPAGKIYSFG SPSVEAVVQR YEAPLPTGGS SQPHSNSSGL DSWRVAVNRV EGTRKLKTEL  120
SQTLESIECE KVKSQILDAA WERDRALWWN NPAEEMDLTR CKVLEQKLME LKMRVDAEVK  180
NRPPEDYEKV LDGHDYLSAA IPLSLAHLMP NHASVCPSND FMSWWINNIG ATPSNYIILG  240
PNNAANVSPI NFPTGMYNFG GSSASNFGPM SSSRSTAGVM NPGFGPNSSY CVGPSSRINF  300
TG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-32M-type_MADS family protein