PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0043s0027.3.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 1592aa MW: 176412 Da PI: 8.6829

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0043s0027.3.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	5.9e-06	1466	1487	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tGtC+ G++Ck +H++ Kaladp0043s0027.3.p 1466 CHVFEETGTCPQGSKCKLHHPK 1487 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1592 aa Download sequence
MRDVHRHPRY NPYPCQPSLP PPPLSADYPN FCTNLPQPPP PPPPDFQPPL FHHPSSPFSF 60 RSPNCTPPIE HPLDFRASRP HPDRFSVFPR DFPFSSRVPD DWEPSSTYNS GPIYQFQPSS 120 PRRVVVSQHH FTGMDLAPRY DISTIRPNTD FSRSSGDGYF GRRSISSVSS HSDIAHRGWS 180 SKRQHLQDTP NSSSGVRLDE GVGAPPRNWG NPRYSSRANY LDPPRKVQKK SALFRIQMGN 240 SVHSNYSHMK SRISGRCRSG KTSAFEVNCS SPAKHRNTKE GGNARTEGNP AHMSFKSNSL 300 VAKQSITPSS PTNTTDKDFT PRNRKFGKLT APDSMKLGIS GHSAENSSRH LKTNEQTVGS 360 ECDIVCETDC DKADRFDKEI CVEGFNASSG KSMAMLEKRN KLLHDQTPSD KLADNQSWEV 420 SLLTPKTYIN CKGSDESCQL EPEMPTGTGS GLIGIACSAT TVVSVDDLSH HPFHQHVDVA 480 TRVNSLMPYC GNQLANIESP VLKDCIHEEV VSDIPAAEVS EIDRPEYLQA KKLISPLETD 540 VPFNTVVDQS CSEDATENDI IEEHAMPISA DENNNLHQDN GICMTNMKKR KETSIQYEIS 600 DWTPTATALE RDLIDKVVFD FSNGDCMSPN QAEMEKELIC VVDKGLTPVD VSVTDFEVTS 660 TQSKGAAQVG LRGGGSTLVP GSPRAMISHN EGFSHGISKI VQGSSESSRG MEITTSKTVA 720 TADSDPDIPS TMASLERVAK GQITYFNTLF DLKSNDMAPG DDKKEVNNSV ARTNSGHTML 780 VESLPLPNVV TPAHISSISS THNQVFSNAT SERLKCHRNY VLPVPFRTSS SLYFTSPKIE 840 EAHKVRMVKS RTWHRSKIDV PLPDKMSASN VVHSRCHLMK GRKPQSTSYI RKGNSLVRNP 900 SPVVNVSGGA QDSTSVTQPS FPNDQAFFEN KFYDTIEPNQ SGTSDDKVNI QRYEACQLLE 960 KTTPTVSNCS PVESPCLSPM SPVVNCSSEI NSGPMGSPDD TGLVQFHDEM KQKKVTENQI 1020 VALNSLGTQT AVDKGSISAK PDSIMYLKHN SYQLVAASGP SHLSVEKAQD AQILSSDGYY 1080 KMKNNQIIRT PLDTAQPPPV SGGNLNTEGL HAENMFTGPS TLQSYKGTMH KSSNSSLVWT 1140 LHGAQPTSKM PQGQVRCKRA TSWRDMRNSG ASLINRSSLM IRMLTLCRCR NTIYKRSTNG 1200 LSLRKYKVLA LDGYSLKWSK SIERRSKKAS EDATRAVVAA ESKKREQNRL QRTMSKEKNK 1260 LHSSRGRIFR IGAVRYRMDP SRNTLQRIID GGSQPGALED ADSKGFYVPK RLVIGKDEYI 1320 RIGNGNQLIR DPKKRIRMLA NEKIKWSLHN VRLRLVKKRR FCQFYTRFGK CNKDDGKCPF 1380 IHDSSKIAVC TKFLKGICFE PNCKLTHKVI PERMEDCAYF LLGMCSNESC PYRHVNVNPN 1440 ATTCEGFLKG YCADGDECQK KHSYVCHVFE ETGTCPQGSK CKLHHPKKRK VKQTNFRMQN 1500 SAKGRYFGSP PPGVGPQTVV LMKHLTASSA NIFEDGYIPD FISLHGGGDN DVEDISCASE 1560 NVDNFMDIEV CDLDTLIKPV GIMNKDLGKN T*

Sequence ? help Back to Top

Protein Sequence Length: 1592 aa Download sequence

MRDVHRHPRY NPYPCQPSLP PPPLSADYPN FCTNLPQPPP PPPPDFQPPL FHHPSSPFSF  60
RSPNCTPPIE HPLDFRASRP HPDRFSVFPR DFPFSSRVPD DWEPSSTYNS GPIYQFQPSS  120
PRRVVVSQHH FTGMDLAPRY DISTIRPNTD FSRSSGDGYF GRRSISSVSS HSDIAHRGWS  180
SKRQHLQDTP NSSSGVRLDE GVGAPPRNWG NPRYSSRANY LDPPRKVQKK SALFRIQMGN  240
SVHSNYSHMK SRISGRCRSG KTSAFEVNCS SPAKHRNTKE GGNARTEGNP AHMSFKSNSL  300
VAKQSITPSS PTNTTDKDFT PRNRKFGKLT APDSMKLGIS GHSAENSSRH LKTNEQTVGS  360
ECDIVCETDC DKADRFDKEI CVEGFNASSG KSMAMLEKRN KLLHDQTPSD KLADNQSWEV  420
SLLTPKTYIN CKGSDESCQL EPEMPTGTGS GLIGIACSAT TVVSVDDLSH HPFHQHVDVA  480
TRVNSLMPYC GNQLANIESP VLKDCIHEEV VSDIPAAEVS EIDRPEYLQA KKLISPLETD  540
VPFNTVVDQS CSEDATENDI IEEHAMPISA DENNNLHQDN GICMTNMKKR KETSIQYEIS  600
DWTPTATALE RDLIDKVVFD FSNGDCMSPN QAEMEKELIC VVDKGLTPVD VSVTDFEVTS  660
TQSKGAAQVG LRGGGSTLVP GSPRAMISHN EGFSHGISKI VQGSSESSRG MEITTSKTVA  720
TADSDPDIPS TMASLERVAK GQITYFNTLF DLKSNDMAPG DDKKEVNNSV ARTNSGHTML  780
VESLPLPNVV TPAHISSISS THNQVFSNAT SERLKCHRNY VLPVPFRTSS SLYFTSPKIE  840
EAHKVRMVKS RTWHRSKIDV PLPDKMSASN VVHSRCHLMK GRKPQSTSYI RKGNSLVRNP  900
SPVVNVSGGA QDSTSVTQPS FPNDQAFFEN KFYDTIEPNQ SGTSDDKVNI QRYEACQLLE  960
KTTPTVSNCS PVESPCLSPM SPVVNCSSEI NSGPMGSPDD TGLVQFHDEM KQKKVTENQI  1020
VALNSLGTQT AVDKGSISAK PDSIMYLKHN SYQLVAASGP SHLSVEKAQD AQILSSDGYY  1080
KMKNNQIIRT PLDTAQPPPV SGGNLNTEGL HAENMFTGPS TLQSYKGTMH KSSNSSLVWT  1140
LHGAQPTSKM PQGQVRCKRA TSWRDMRNSG ASLINRSSLM IRMLTLCRCR NTIYKRSTNG  1200
LSLRKYKVLA LDGYSLKWSK SIERRSKKAS EDATRAVVAA ESKKREQNRL QRTMSKEKNK  1260
LHSSRGRIFR IGAVRYRMDP SRNTLQRIID GGSQPGALED ADSKGFYVPK RLVIGKDEYI  1320
RIGNGNQLIR DPKKRIRMLA NEKIKWSLHN VRLRLVKKRR FCQFYTRFGK CNKDDGKCPF  1380
IHDSSKIAVC TKFLKGICFE PNCKLTHKVI PERMEDCAYF LLGMCSNESC PYRHVNVNPN  1440
ATTCEGFLKG YCADGDECQK KHSYVCHVFE ETGTCPQGSK CKLHHPKKRK VKQTNFRMQN  1500
SAKGRYFGSP PPGVGPQTVV LMKHLTASSA NIFEDGYIPD FISLHGGGDN DVEDISCASE  1560
NVDNFMDIEV CDLDTLIKPV GIMNKDLGKN T*