PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0043s0153.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 666aa MW: 73662.4 Da PI: 4.8469

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0043s0153.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3.1e-07	110	132	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp Kaladp0043s0153.1.p 110 VPCIFFQK-GLCLKGDRCAFLHGP 132 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MVPDTNQPAA PEDEASKRNT DCVYFLASPL TCKKGSECEF RHSEYARVNP RDCWYWLNGS 60 CLNPKCAFRH PPLGGLLGTQ AAVSAGTALA SPQAVAPTPP VAASQSKQAV PCIFFQKGLC 120 LKGDRCAFLH GPNSVATKPP QSAPPSAGVT GSRSVFTITQ GSSEPNNSDL NMYTDVKSVP 180 KVSNAQPKAN AMAERVVFPS RGFNDEKLSY KSTTVAPLPS GSNILSSNRM YETEKPDDHV 240 TLNDKEADDF YRESSPGFDV LVDDELAEDQ YYDEDHYGAA VAGEGKNMKD LDSLPDVDHE 300 MFERSYDGFD RVSAQYSRDK RRISSERTLR GSASLEGRND NKEGRSDRIG QTDLRHRLKQ 360 KKGGGLRSVI SNNNHDERRS ADSRRDSWLT TPPESSLSGR LQGRIRDIQS PPVRGVFSDR 420 DSERGRNIRR KSPGRTRIHD RIGTRVHDDF GNERNSRGYE GRIEGSEDGV DEFSGPKKLS 480 ELKACKSSVK DRLMSGQESF SLGKRKSTGE HEQLDSDLSF EGPKPLSEIL KRKKRSEMNA 540 PGTVSSEHKV TNETKSSENS SINKEEPKSA ADVSEKRTEP DHTQPFEAPN SDQVDQEEGI 600 IADEGMEDQN FEGHNQGEGG EEYYYEDGEE YNLEDENIDG ENIEGEYADE EDGDDFEKKI 660 GGMFS*

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MVPDTNQPAA PEDEASKRNT DCVYFLASPL TCKKGSECEF RHSEYARVNP RDCWYWLNGS  60
CLNPKCAFRH PPLGGLLGTQ AAVSAGTALA SPQAVAPTPP VAASQSKQAV PCIFFQKGLC  120
LKGDRCAFLH GPNSVATKPP QSAPPSAGVT GSRSVFTITQ GSSEPNNSDL NMYTDVKSVP  180
KVSNAQPKAN AMAERVVFPS RGFNDEKLSY KSTTVAPLPS GSNILSSNRM YETEKPDDHV  240
TLNDKEADDF YRESSPGFDV LVDDELAEDQ YYDEDHYGAA VAGEGKNMKD LDSLPDVDHE  300
MFERSYDGFD RVSAQYSRDK RRISSERTLR GSASLEGRND NKEGRSDRIG QTDLRHRLKQ  360
KKGGGLRSVI SNNNHDERRS ADSRRDSWLT TPPESSLSGR LQGRIRDIQS PPVRGVFSDR  420
DSERGRNIRR KSPGRTRIHD RIGTRVHDDF GNERNSRGYE GRIEGSEDGV DEFSGPKKLS  480
ELKACKSSVK DRLMSGQESF SLGKRKSTGE HEQLDSDLSF EGPKPLSEIL KRKKRSEMNA  540
PGTVSSEHKV TNETKSSENS SINKEEPKSA ADVSEKRTEP DHTQPFEAPN SDQVDQEEGI  600
IADEGMEDQN FEGHNQGEGG EEYYYEDGEE YNLEDENIDG ENIEGEYADE EDGDDFEKKI  660
GGMFS*