PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0452.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 258aa    MW: 28221.3 Da    PI: 7.6392
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0452.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.95.5e-183374849
                         HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          r +tfskR++gi KKA EL+v+Cdaeva i+fs++g+ + y
  Kaladp0045s0452.1.p 33 DRLITFSKRKAGINKKATELCVMCDAEVAFILFSPKGNAFAY 74
                         6889*********************************87666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
METGGGSRQQ EAGKKKTKGR QKTQMRLVQR EEDRLITFSK RKAGINKKAT ELCVMCDAEV  60
AFILFSPKGN AFAYGHPDVR SVMNKFLGRE EQYPVSGDPR VIQIMDEHRR GKHDELVDIH  120
NMLQSQVNQL AQLKEAVKQM SESRGDQKGW WDAKVADMKT PEEVKEMHNN IVGFQEALCR  180
HMEMLQFIHQ AAAAPPPPPP NPIFVPAFIQ ETPQFLTPPP MAFVNPAGAP VIGLGGDPGG  240
EPASGVGDGG PGAFVGL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.12e-21M-type_MADS family protein