PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0045s0505.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 446aa MW: 49248 Da PI: 8.2948

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0045s0505.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.4	7.4e-11	44	69	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +f+rtG C yG +C+++H+ Kaladp0045s0505.1.p 44 PGEPNCIYFLRTGSCGYGTNCRYNHP 69 5789*********************9 PP
2	zf-CCCH	40.8	3.8e-13	89	114	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ff++tGtCkyG++Ck++H++ Kaladp0045s0505.1.p 89 GEPDCGFFMKTGTCKYGSSCKYNHPR 114 6899********************96 PP
3	zf-CCCH	36.8	6.5e-12	137	159	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G+ CkF+H++ Kaladp0045s0505.1.p 137 PCTYYMRTGQCKFGPACKFHHPE 159 8********************96 PP
4	zf-CCCH	37.3	4.5e-12	280	305	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ Ck++H++ Kaladp0045s0505.1.p 280 DQPECRYFMNSGTCKYGPDCKYNHPR 305 689*********************96 PP
5	zf-CCCH	30.6	5.6e-10	325	349	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ++++lC+ ++ +G+C+ G++CkF+H Kaladp0045s0505.1.p 325 PGQPLCSSYSTYGICSNGPTCKFHH 349 589********************** PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MQDNNSNNAV AVHNESLREP SIRPKMHNKY KHQEGAVTDY PDRPGEPNCI YFLRTGSCGY 60 GTNCRYNHPT HVAQDVVYGL GGELPERDGE PDCGFFMKTG TCKYGSSCKY NHPRDRNDGS 120 PVSFNILGLP MRSEGNPCTY YMRTGQCKFG PACKFHHPEP AFPGLVFPVF GTTHLGSTES 180 SNLHIRTFPA LPIPAAAYVY DPQTQTQQPY MPLAVSPSQG FLPQQGWSTY QRNMSPVSST 240 NTRGSSPSYN SSSRCLGASG SNGQVHYLSF FTPPYPERPD QPECRYFMNS GTCKYGPDCK 300 YNHPRERIAQ MLPQPVNPLG LPFRPGQPLC SSYSTYGICS NGPTCKFHHQ VSGYPLNCGL 360 SPFPLPLPMP VFDEPIFGRR SSTVVISSET SSPSKSPKDL DWMRKPESAT ERSRHLGTNG 420 LQKSHDEEAG TMRNSSPASS TKKHD*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MQDNNSNNAV AVHNESLREP SIRPKMHNKY KHQEGAVTDY PDRPGEPNCI YFLRTGSCGY  60
GTNCRYNHPT HVAQDVVYGL GGELPERDGE PDCGFFMKTG TCKYGSSCKY NHPRDRNDGS  120
PVSFNILGLP MRSEGNPCTY YMRTGQCKFG PACKFHHPEP AFPGLVFPVF GTTHLGSTES  180
SNLHIRTFPA LPIPAAAYVY DPQTQTQQPY MPLAVSPSQG FLPQQGWSTY QRNMSPVSST  240
NTRGSSPSYN SSSRCLGASG SNGQVHYLSF FTPPYPERPD QPECRYFMNS GTCKYGPDCK  300
YNHPRERIAQ MLPQPVNPLG LPFRPGQPLC SSYSTYGICS NGPTCKFHHQ VSGYPLNCGL  360
SPFPLPLPMP VFDEPIFGRR SSTVVISSET SSPSKSPKDL DWMRKPESAT ERSRHLGTNG  420
LQKSHDEEAG TMRNSSPASS TKKHD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-99	C3H family protein