PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0045s0505.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 435aa MW: 48192 Da PI: 8.2023

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0045s0505.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	7.2e-11	33	58	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +f+rtG C yG +C+++H+ Kaladp0045s0505.2.p 33 PGEPNCIYFLRTGSCGYGTNCRYNHP 58 5789*********************9 PP
2	zf-CCCH	40.8	3.7e-13	78	103	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ff++tGtCkyG++Ck++H++ Kaladp0045s0505.2.p 78 GEPDCGFFMKTGTCKYGSSCKYNHPR 103 6899********************96 PP
3	zf-CCCH	36.9	6.3e-12	126	148	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G+ CkF+H++ Kaladp0045s0505.2.p 126 PCTYYMRTGQCKFGPACKFHHPE 148 8********************96 PP
4	zf-CCCH	37.4	4.4e-12	269	294	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ Ck++H++ Kaladp0045s0505.2.p 269 DQPECRYFMNSGTCKYGPDCKYNHPR 294 689*********************96 PP
5	zf-CCCH	30.7	5.4e-10	314	338	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ++++lC+ ++ +G+C+ G++CkF+H Kaladp0045s0505.2.p 314 PGQPLCSSYSTYGICSNGPTCKFHH 338 589********************** PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MDEWMFVEPS IRPKMHNKYK HQEGAVTDYP DRPGEPNCIY FLRTGSCGYG TNCRYNHPTH 60 VAQDVVYGLG GELPERDGEP DCGFFMKTGT CKYGSSCKYN HPRDRNDGSP VSFNILGLPM 120 RSEGNPCTYY MRTGQCKFGP ACKFHHPEPA FPGLVFPVFG TTHLGSTESS NLHIRTFPAL 180 PIPAAAYVYD PQTQTQQPYM PLAVSPSQGF LPQQGWSTYQ RNMSPVSSTN TRGSSPSYNS 240 SSRCLGASGS NGQVHYLSFF TPPYPERPDQ PECRYFMNSG TCKYGPDCKY NHPRERIAQM 300 LPQPVNPLGL PFRPGQPLCS SYSTYGICSN GPTCKFHHQV SGYPLNCGLS PFPLPLPMPV 360 FDEPIFGRRS STVVISSETS SPSKSPKDLD WMRKPESATE RSRHLGTNGL QKSHDEEAGT 420 MRNSSPASST KKHD*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MDEWMFVEPS IRPKMHNKYK HQEGAVTDYP DRPGEPNCIY FLRTGSCGYG TNCRYNHPTH  60
VAQDVVYGLG GELPERDGEP DCGFFMKTGT CKYGSSCKYN HPRDRNDGSP VSFNILGLPM  120
RSEGNPCTYY MRTGQCKFGP ACKFHHPEPA FPGLVFPVFG TTHLGSTESS NLHIRTFPAL  180
PIPAAAYVYD PQTQTQQPYM PLAVSPSQGF LPQQGWSTYQ RNMSPVSSTN TRGSSPSYNS  240
SSRCLGASGS NGQVHYLSFF TPPYPERPDQ PECRYFMNSG TCKYGPDCKY NHPRERIAQM  300
LPQPVNPLGL PFRPGQPLCS SYSTYGICSN GPTCKFHHQV SGYPLNCGLS PFPLPLPMPV  360
FDEPIFGRRS STVVISSETS SPSKSPKDLD WMRKPESATE RSRHLGTNGL QKSHDEEAGT  420
MRNSSPASST KKHD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	4e-99	C3H family protein