PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0046s0292.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 844aa MW: 91282.2 Da PI: 6.9098

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0046s0292.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.7e-06	388	409	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G C Gd+C+F+H+ Kaladp0046s0292.1.p 388 KVCQHFLK-GRCLKGDKCTFSHD 409 68****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence
MAEEHGAALL NLTCLRGESR LKSETLRGVI HILSRCYELP KETCRGDDSG PGGDHKNSLH 60 LNEPDPATAI NLDAAEDIIS THDSQHGDDQ QMHFSMDDIE NFLMDIDGIQ EPVPVNVSIN 120 QKALQLVPGA LLEKEAVEQH LPESSQHENG FLNIVEFDEA AQRASGSDKC VPSQKEQINQ 180 NQLLDEPNIQ SGSTNSQTNV HMTNGCDDIE EGEIDDIHAQ EKSSVSRENN VDSLQHSEAG 240 ADYQHSVEHK LCVSDFSRST SVRIVDNCPI QNDSKIERDF QAISDACANF DTVKTVDIPI 300 VNSAETHASL CANDSRKPVF YGDISEEASQ NAQGTLQMGV NIFKEKKRGG SSKEKRKLQK 360 RKKRKEIDKK LGVKRMKLPP ALMPKAVKVC QHFLKGRCLK GDKCTFSHDA TPLTKSEACV 420 HFARNNCLKG DACPYDHQLG KYPCNNYASQ GFCNRGNGCL FSHEIPAEEG SQGASTAEKL 480 DLKSPSVPET SSKIHANSAA SISIKPPVQV PKGLSFLSLG KSGSDSFSRR KPSSSSQIAD 540 MIGLSNHSRH NVPGTAKILK GTSKPILAPV TSNNDSFLDT QLDHSVGNKN SVFKACSKSL 600 IDSTSSLDRG LLGLHSLVSS KVPLNCVNNE LLETSAKEHT PPVSHFSRLG MHSGSSMGNE 660 MSVLKVDIHK EQTSISKSQI TDNMHVEAIQ AEAPTRVHCF SSDKSLEIKP NQTLAASISK 720 DHESGKKVSI QNQRTHGIPR HSCAEELNTI VSTIPSSCSQ GLAENKSMLC SVPKALIPAL 780 SFASKIECET KVPSLGSVGN SQFKKEPESG ISSSRGRGSF NSGPVKASAV LDFIFGTGGK 840 TQK*

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence

MAEEHGAALL NLTCLRGESR LKSETLRGVI HILSRCYELP KETCRGDDSG PGGDHKNSLH  60
LNEPDPATAI NLDAAEDIIS THDSQHGDDQ QMHFSMDDIE NFLMDIDGIQ EPVPVNVSIN  120
QKALQLVPGA LLEKEAVEQH LPESSQHENG FLNIVEFDEA AQRASGSDKC VPSQKEQINQ  180
NQLLDEPNIQ SGSTNSQTNV HMTNGCDDIE EGEIDDIHAQ EKSSVSRENN VDSLQHSEAG  240
ADYQHSVEHK LCVSDFSRST SVRIVDNCPI QNDSKIERDF QAISDACANF DTVKTVDIPI  300
VNSAETHASL CANDSRKPVF YGDISEEASQ NAQGTLQMGV NIFKEKKRGG SSKEKRKLQK  360
RKKRKEIDKK LGVKRMKLPP ALMPKAVKVC QHFLKGRCLK GDKCTFSHDA TPLTKSEACV  420
HFARNNCLKG DACPYDHQLG KYPCNNYASQ GFCNRGNGCL FSHEIPAEEG SQGASTAEKL  480
DLKSPSVPET SSKIHANSAA SISIKPPVQV PKGLSFLSLG KSGSDSFSRR KPSSSSQIAD  540
MIGLSNHSRH NVPGTAKILK GTSKPILAPV TSNNDSFLDT QLDHSVGNKN SVFKACSKSL  600
IDSTSSLDRG LLGLHSLVSS KVPLNCVNNE LLETSAKEHT PPVSHFSRLG MHSGSSMGNE  660
MSVLKVDIHK EQTSISKSQI TDNMHVEAIQ AEAPTRVHCF SSDKSLEIKP NQTLAASISK  720
DHESGKKVSI QNQRTHGIPR HSCAEELNTI VSTIPSSCSQ GLAENKSMLC SVPKALIPAL  780
SFASKIECET KVPSLGSVGN SQFKKEPESG ISSSRGRGSF NSGPVKASAV LDFIFGTGGK  840
TQK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	346	365	KKRGGSSKEKRKLQKRKKRK
2	356	371	RKLQKRKKRKEIDKKL
3	361	366	RKKRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	3e-06	C3H family protein