PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0046s0292.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 753aa MW: 81413.4 Da PI: 7.5465

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0046s0292.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	297	318	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G C Gd+C+F+H+ Kaladp0046s0292.2.p 297 KVCQHFLK-GRCLKGDKCTFSHD 318 68****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MHFSMDDIEN FLMDIDGIQE PVPVNVSINQ KALQLVPGAL LEKEAVEQHL PESSQHENGF 60 LNIVEFDEAA QRASGSDKCV PSQKEQINQN QLLDEPNIQS GSTNSQTNVH MTNGCDDIEE 120 GEIDDIHAQE KSSVSRENNV DSLQHSEAGA DYQHSVEHKL CVSDFSRSTS VRIVDNCPIQ 180 NDSKIERDFQ AISDACANFD TVKTVDIPIV NSAETHASLC ANDSRKPVFY GDISEEASQN 240 AQGTLQMGVN IFKEKKRGGS SKEKRKLQKR KKRKEIDKKL GVKRMKLPPA LMPKAVKVCQ 300 HFLKGRCLKG DKCTFSHDAT PLTKSEACVH FARNNCLKGD ACPYDHQLGK YPCNNYASQG 360 FCNRGNGCLF SHEIPAEEGS QGASTAEKLD LKSPSVPETS SKIHANSAAS ISIKPPVQVP 420 KGLSFLSLGK SGSDSFSRRK PSSSSQIADM IGLSNHSRHN VPGTAKILKG TSKPILAPVT 480 SNNDSFLDTQ LDHSVGNKNS VFKACSKSLI DSTSSLDRGL LGLHSLVSSK VPLNCVNNEL 540 LETSAKEHTP PVSHFSRLGM HSGSSMGNEM SVLKVDIHKE QTSISKSQIT DNMHVEAIQA 600 EAPTRVHCFS SDKSLEIKPN QTLAASISKD HESGKKVSIQ NQRTHGIPRH SCAEELNTIV 660 STIPSSCSQG LAENKSMLCS VPKALIPALS FASKIECETK VPSLGSVGNS QFKKEPESGI 720 SSSRGRGSFN SGPVKASAVL DFIFGTGGKT QK*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MHFSMDDIEN FLMDIDGIQE PVPVNVSINQ KALQLVPGAL LEKEAVEQHL PESSQHENGF  60
LNIVEFDEAA QRASGSDKCV PSQKEQINQN QLLDEPNIQS GSTNSQTNVH MTNGCDDIEE  120
GEIDDIHAQE KSSVSRENNV DSLQHSEAGA DYQHSVEHKL CVSDFSRSTS VRIVDNCPIQ  180
NDSKIERDFQ AISDACANFD TVKTVDIPIV NSAETHASLC ANDSRKPVFY GDISEEASQN  240
AQGTLQMGVN IFKEKKRGGS SKEKRKLQKR KKRKEIDKKL GVKRMKLPPA LMPKAVKVCQ  300
HFLKGRCLKG DKCTFSHDAT PLTKSEACVH FARNNCLKGD ACPYDHQLGK YPCNNYASQG  360
FCNRGNGCLF SHEIPAEEGS QGASTAEKLD LKSPSVPETS SKIHANSAAS ISIKPPVQVP  420
KGLSFLSLGK SGSDSFSRRK PSSSSQIADM IGLSNHSRHN VPGTAKILKG TSKPILAPVT  480
SNNDSFLDTQ LDHSVGNKNS VFKACSKSLI DSTSSLDRGL LGLHSLVSSK VPLNCVNNEL  540
LETSAKEHTP PVSHFSRLGM HSGSSMGNEM SVLKVDIHKE QTSISKSQIT DNMHVEAIQA  600
EAPTRVHCFS SDKSLEIKPN QTLAASISKD HESGKKVSIQ NQRTHGIPRH SCAEELNTIV  660
STIPSSCSQG LAENKSMLCS VPKALIPALS FASKIECETK VPSLGSVGNS QFKKEPESGI  720
SSSRGRGSFN SGPVKASAVL DFIFGTGGKT QK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	274	KKRGGSSKEKRKLQKRKKRK
2	265	280	RKLQKRKKRKEIDKKL
3	270	275	RKKRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	3e-06	C3H family protein