PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0047s0078.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26369 Da    PI: 5.4832
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0047s0078.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.5e-234487750
                         HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          +rqvtfskRr+g++KKA ELSvLC+ae+a+i++s+ gk y++ 
  Kaladp0047s0078.1.p 44 DQRQVTFSKRRTGLFKKAGELSVLCGAEIAIIVVSEGGKPYTFG 87
                         58****************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MVILAEEHHD HDKNNVRKNI VSDTVRKKSK GRQKIEIKKI LKPDQRQVTF SKRRTGLFKK  60
AGELSVLCGA EIAIIVVSEG GKPYTFGSPN VDQVLERYVK DGMSNGGAEM VSFKGLCSVE  120
QSKSMLPDEV YRVDQRDHDD KYKCFVEATR ELEEKRKGKR AAEMGGWTGA GDEGLYLWDE  180
CVESMCLEEL EEYLKAMQEM RARIVDHLEQ ISIKEETDAI WWHEIAQLED *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-31M-type_MADS family protein