PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0092.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LSD

Protein Properties

Length: 178aa MW: 18607.6 Da PI: 8.3885

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0092.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.5	7.9e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++Cr lL YPrGA++V+Ca+C ++ Kaladp0048s0092.1.p 7 CSSCRSLLLYPRGATNVCCAICRAI 31 **********************986 PP
2	zf-LSD1	39.7	7.9e-13	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y GA+s+RC++C+tV Kaladp0048s0092.1.p 46 CGGCRTLLMYACGATSIRCSCCHTV 70 ************************9 PP
3	zf-LSD1	48.1	1.9e-15	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Kaladp0048s0092.1.p 84 CGNCRTTLMYPYGAPSVKCAVCQYV 108 ***********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MQSQLMCSSC RSLLLYPRGA TNVCCAICRA ITSVPPPGIE MAQLICGGCR TLLMYACGAT 60 SIRCSCCHTV NLAPASNQVA HVNCGNCRTT LMYPYGAPSV KCAVCQYVTN VATSDGRVPI 120 PVSRPNGVSV SSSSTSTSTQ VMPHIQNQTV VVENPMTVDE SGKLVSNVVV GVTKDKK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-70	LSD family protein