PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0504.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 357aa MW: 38774.6 Da PI: 6.8785

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0504.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ +G g+W+++++ g+ R++k+c++rw +yl Kaladp0048s0504.1.p 14 RGLWSPEEDEKLVNYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.8	1.7e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++t+E l++d+++ lG++ W+ Ia++++ gRt++++k++w+ Kaladp0048s0504.1.p 67 RGSFSTQEAALIIDLHAVLGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF STQEAALIID LHAVLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSSS 120 PSAQSNFYIN PAAAPSTNTF PAYGLQNNCN SLMMINSNNY VSTFESELLQ GTPFSLGDDN 180 LIALASSSPK NHTHTVGSEV YVPQISPGFK IFDLVVPDDH GAGFYQPVLN YPYECEAGIN 240 TTTAWPSLMG PNSNSGIVNQ STAPLLVPTD DHRHLGLKND LIQMITCDNS SMIISSDIFD 300 DLQLAGAAAC SKLDAGFPQG RQDHGEAVIS SSSSSSSPIS SAQLAVSLCE KTCQTW*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF STQEAALIID LHAVLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSSS  120
PSAQSNFYIN PAAAPSTNTF PAYGLQNNCN SLMMINSNNY VSTFESELLQ GTPFSLGDDN  180
LIALASSSPK NHTHTVGSEV YVPQISPGFK IFDLVVPDDH GAGFYQPVLN YPYECEAGIN  240
TTTAWPSLMG PNSNSGIVNQ STAPLLVPTD DHRHLGLKND LIQMITCDNS SMIISSDIFD  300
DLQLAGAAAC SKLDAGFPQG RQDHGEAVIS SSSSSSSPIS SAQLAVSLCE KTCQTW*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	7e-74	MYB family protein