PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0733.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 335aa    MW: 37511.1 Da    PI: 7.6598
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0733.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.8e-0885109126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+ C  f   G C+ G++C+FaHg
  Kaladp0048s0733.1.p  85 FKTRVCAKFKL-GLCRNGENCNFAHG 109
                          69*********.*************9 PP
2zf-CCCH29.51.3e-09145168225
                          -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                          k++lC+ f+ +  C+yG+rC+F H
  Kaladp0048s0733.1.p 145 KMKLCKKFSNGEVCPYGERCNFLH 168
                          889*******66************ PP
3zf-CCCH31.53e-10227253127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC+ f ++G+C++Gd+C FaHg+
  Kaladp0048s0733.1.p 227 WKTKLCCKFEANGFCSFGDKCGFAHGR 253
                          8************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MSFPESQSPF VPPGFGSSSD AIQINSWQQY SVSNQDYNRN AQFEQPRPLK RPREEENQSD  60
NVVVVPQRMP SSTIPVNKGI TNIFFKTRVC AKFKLGLCRN GENCNFAHGV EDLRQPPPNW  120
QELVGGREED RGAGNWDDEQ RIALKMKLCK KFSNGEVCPY GERCNFLHED PKRFRDDSVR  180
FRESAAISIG TTINTVARHG SSLDQTDTNP INAGSDAYRM NVRIEHWKTK LCCKFEANGF  240
CSFGDKCGFA HGRAELQGPV AHAEGELRSA GPLTTSMNPI LDMPNDLPSR TVNNAVLNEE  300
RAGKKDFSKL KGPKKINRIY ADWIDDLPLD TPLT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-79C3H family protein