PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0053s0445.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 664aa MW: 72361 Da PI: 6.5952

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0053s0445.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.6e-07	252	272	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg Kaladp0053s0445.1.p 252 PCPEFRK-GTCRQGDACEYAHG 272 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence
MEEEGLRNMS SKLLEFAACD DLVGFRKAVE EEGCDIDDAG LWYGKRMGMK KMGLEERTPL 60 MIAAMFGSVD VLRYILEKGC VDVNRMCGSD GATALGCAIA GGAASASQVI GLLIDASADV 120 NLVGAYARNL GALVSRVAPV VNVSKDFNGA ELVSDPFDQE LIGGELEGEK LIGISVIEPF 180 KDVLEKRDYP IDLSLPDIKN GIYGTDEFRM YTFKIKPCSR AYSHDWTECP FVHPGENARR 240 RDPRKHHYSC VPCPEFRKGT CRQGDACEYA HGIFECWLHP AQYRTRLCKD ETGCNRRVCF 300 FAHKPEELRP LYASTGSAIP SPRSYSASGQ LDMSSLSPLA LGSPSVLIPS SSTPPMTPTG 360 LSSPRSGSMW QNQSVAFATN SRLKSTLSGR NLEFDSADQL GTESQHRRQQ QQQLMDEMYG 420 LSSPSFWSQA YESNSSYAAG SPAARVGEFN RLMARKSSNL EDIFTSADHS VMSQLQRLSL 480 DVNQSPSGIQ MHQSVNHQQL RASNPSNLSS SPARSPSFGN SSSSAAAFLS SRSNAFAKRS 540 QSFIDRSPTN LNSGYPSPVS SPSPLHGWGS PTGKLDWGVQ GEELHKLRKS SSFGIRTNGR 600 SPAPGDLEIP WPSQSPSPSP HMKGSGPMDR LDEESHAQYH LSSGKIPTWA EQMCLDHEQT 660 VAH*

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence

MEEEGLRNMS SKLLEFAACD DLVGFRKAVE EEGCDIDDAG LWYGKRMGMK KMGLEERTPL  60
MIAAMFGSVD VLRYILEKGC VDVNRMCGSD GATALGCAIA GGAASASQVI GLLIDASADV  120
NLVGAYARNL GALVSRVAPV VNVSKDFNGA ELVSDPFDQE LIGGELEGEK LIGISVIEPF  180
KDVLEKRDYP IDLSLPDIKN GIYGTDEFRM YTFKIKPCSR AYSHDWTECP FVHPGENARR  240
RDPRKHHYSC VPCPEFRKGT CRQGDACEYA HGIFECWLHP AQYRTRLCKD ETGCNRRVCF  300
FAHKPEELRP LYASTGSAIP SPRSYSASGQ LDMSSLSPLA LGSPSVLIPS SSTPPMTPTG  360
LSSPRSGSMW QNQSVAFATN SRLKSTLSGR NLEFDSADQL GTESQHRRQQ QQQLMDEMYG  420
LSSPSFWSQA YESNSSYAAG SPAARVGEFN RLMARKSSNL EDIFTSADHS VMSQLQRLSL  480
DVNQSPSGIQ MHQSVNHQQL RASNPSNLSS SPARSPSFGN SSSSAAAFLS SRSNAFAKRS  540
QSFIDRSPTN LNSGYPSPVS SPSPLHGWGS PTGKLDWGVQ GEELHKLRKS SSFGIRTNGR  600
SPAPGDLEIP WPSQSPSPSP HMKGSGPMDR LDEESHAQYH LSSGKIPTWA EQMCLDHEQT  660
VAH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-145	C3H family protein