PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0058s0175.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 442aa MW: 47147.7 Da PI: 7.4646

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0058s0175.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.8	7.5e-13	47	72	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ Cr+++rtG+C yG+rC+F+H+p Kaladp0058s0175.1.p 47 DEADCRYYLRTGFCGYGERCRFNHPP 72 6799********************97 PP
2	zf-CCCH	37.3	4.7e-12	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+ tGtC++G++Ck++H++ Kaladp0058s0175.1.p 97 QPVCKYFMMTGTCRFGSSCKYHHPR 121 689********************96 PP
3	zf-CCCH	22.6	1.8e-07	140	165	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +t +Ck+G +CkF+H++ Kaladp0058s0175.1.p 140 GEKECSYYIKTCHCKFGVTCKFHHPQ 165 7899********************97 PP
4	zf-CCCH	40.1	6e-13	305	331	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Kaladp0058s0175.1.p 305 PGQPECQYYMKTGDCKYGSSCRYHHPP 331 5789*********************97 PP
5	zf-CCCH	27.4	5.7e-09	351	374	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C +fa++G CkyG Ck+ H+ Kaladp0058s0175.1.p 351 APPCIYFAQYGVCKYGYACKYDHS 374 689********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MEGYVHGRNP GAGGSRSQSD QGGEGYAEES TWRLGFGGQE SYPERPDEAD CRYYLRTGFC 60 GYGERCRFNH PPDRTTVVGV LGLGGGEYSE YPQRVGQPVC KYFMMTGTCR FGSSCKYHHP 120 RQGGGTLVSL NYLGYPLRPG EKECSYYIKT CHCKFGVTCK FHHPQPSNIH VTTATPGQGI 180 PPGSAPGLYP QVQPASISAA QPYGVMPGNW QVARPPTMFP GPYIQGPYAS MLVPHGMVPV 240 PEWGTFSAHV SPALPSQPTA ASSPLHGITQ LSPSAPEYTG LYSSVSPSVS GSSSSQKESG 300 LPERPGQPEC QYYMKTGDCK YGSSCRYHHP PELIRPETIS EPANLPIRPG APPCIYFAQY 360 GVCKYGYACK YDHSSRTLCY SPSASSLTDM PEAPVAVGSS TGTVAASSSS SDLHQEIAAL 420 SIKDSSPHPT PTPTPIASSA S*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MEGYVHGRNP GAGGSRSQSD QGGEGYAEES TWRLGFGGQE SYPERPDEAD CRYYLRTGFC  60
GYGERCRFNH PPDRTTVVGV LGLGGGEYSE YPQRVGQPVC KYFMMTGTCR FGSSCKYHHP  120
RQGGGTLVSL NYLGYPLRPG EKECSYYIKT CHCKFGVTCK FHHPQPSNIH VTTATPGQGI  180
PPGSAPGLYP QVQPASISAA QPYGVMPGNW QVARPPTMFP GPYIQGPYAS MLVPHGMVPV  240
PEWGTFSAHV SPALPSQPTA ASSPLHGITQ LSPSAPEYTG LYSSVSPSVS GSSSSQKESG  300
LPERPGQPEC QYYMKTGDCK YGSSCRYHHP PELIRPETIS EPANLPIRPG APPCIYFAQY  360
GVCKYGYACK YDHSSRTLCY SPSASSLTDM PEAPVAVGSS TGTVAASSSS SDLHQEIAAL  420
SIKDSSPHPT PTPTPIASSA S*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-118	C3H family protein