PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0059s0032.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 674aa MW: 74175.7 Da PI: 7.576

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0059s0032.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.2e-06	268	288	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Kaladp0059s0032.1.p 268 PCPEFRK-GSCRQGDACEYAHG 288 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MCIYPKADNT FSSNLLREGR DHKQNMEALM KCSVLLELSA FDDLDSFVKQ VEEKGLSADE 60 AGFWYGRGVG SRKMGIEERT PLMIASMYGS LKIVQYIIGT GKVDVNRACG SDGVTALHCA 120 AAGGSYLALE VTKCLIGASA NINSVDAKGN KPVDLIAPGL KTARFSKRKL LEMLLKGISL 180 TGDEIDREVE QQVITPRLSS EKKEYPVDIS LPDINDGVYG TDEFRMYSFK VKPCSRAYSH 240 DWTECPFVHP GENARRRDPR KYPYTCVPCP EFRKGSCRQG DACEYAHGVF ESWLHPAQYK 300 TRLCKDEVGC ARKVCFFAHK PEELRPVYAS TGSAMPSPKS LSSSMDMGAL SPLPHGSLSS 360 MMPQTSTPPM SPAAATPSPK SGNLWQNKLN LTPPMLQLPG SRLKTASSAR DLEFEMEMLG 420 LENQHRQQQQ YLMDEITRLS SPTSWNKQQS RFGDLNPTNL DDSFGSLDMS LLSQMQGISS 480 QIQSPTGLQM RQSLNQHGNY PNNYCSSPVR KQAPSFGFDS SAAVAAAVMK SRTSAFAKRS 540 QSFVDRSVGN NRGGLNGSGH SMNMTASNIS DWNSPSGRLD WGMQGEDLNK LRKSASFGIR 600 SSNNNNNMAQ TTLAPSTFDE PDVSWVNSLV KDAPTLGSEY CNSPGKQSQY LRSDETLPAW 660 MEQMYIEQEQ MVA*

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MCIYPKADNT FSSNLLREGR DHKQNMEALM KCSVLLELSA FDDLDSFVKQ VEEKGLSADE  60
AGFWYGRGVG SRKMGIEERT PLMIASMYGS LKIVQYIIGT GKVDVNRACG SDGVTALHCA  120
AAGGSYLALE VTKCLIGASA NINSVDAKGN KPVDLIAPGL KTARFSKRKL LEMLLKGISL  180
TGDEIDREVE QQVITPRLSS EKKEYPVDIS LPDINDGVYG TDEFRMYSFK VKPCSRAYSH  240
DWTECPFVHP GENARRRDPR KYPYTCVPCP EFRKGSCRQG DACEYAHGVF ESWLHPAQYK  300
TRLCKDEVGC ARKVCFFAHK PEELRPVYAS TGSAMPSPKS LSSSMDMGAL SPLPHGSLSS  360
MMPQTSTPPM SPAAATPSPK SGNLWQNKLN LTPPMLQLPG SRLKTASSAR DLEFEMEMLG  420
LENQHRQQQQ YLMDEITRLS SPTSWNKQQS RFGDLNPTNL DDSFGSLDMS LLSQMQGISS  480
QIQSPTGLQM RQSLNQHGNY PNNYCSSPVR KQAPSFGFDS SAAVAAAVMK SRTSAFAKRS  540
QSFVDRSVGN NRGGLNGSGH SMNMTASNIS DWNSPSGRLD WGMQGEDLNK LRKSASFGIR  600
SSNNNNNMAQ TTLAPSTFDE PDVSWVNSLV KDAPTLGSEY CNSPGKQSQY LRSDETLPAW  660
MEQMYIEQEQ MVA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein