PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0101.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 224aa MW: 25177.6 Da PI: 5.9149

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0101.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3e-19	78	129	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q +Le +Fe++ ++ +e++e +A++l+L+ rqV vWFqNrRa++k Kaladp0060s0101.1.p 78 RKLTDYQAVQLELCFESEAKLETERKETIAAELELEPRQVAVWFQNRRARWK 129 5899***********************************************9 PP
2	HD-ZIP_I/II	103.4	1.9e-33	77	166	3	92
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kr+l++ q+ +LE +Fe+e kLe+erK+++a eL+l+prqvavWFqnrRAR+k k+lE +++ L+++++ + +++++Le++v+eL +l Kaladp0060s0101.1.p 77 KRKLTDYQAVQLELCFESEAKLETERKETIAAELELEPRQVAVWFQNRRARWKCKKLEDEFANLRTSHQCVLAQKAQLEAQVSELSGRLV 166 9************************************************************************************98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MMTSNMVTMP VNGGHNFPVQ GGDDQLMMFL SSQQQKCLFD PVTLGPKTED QPGKAVKKQR 60 KRKPKNRGGE NGAGYGKRKL TDYQAVQLEL CFESEAKLET ERKETIAAEL ELEPRQVAVW 120 FQNRRARWKC KKLEDEFANL RTSHQCVLAQ KAQLEAQVSE LSGRLVEAES ELQRLSARCE 180 SGISVENSST PGSSLSMEGV QLLENGYAQV MDDYWMSNLY EMM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	67	RKRKPKNR
2	60	79	RKRKPKNRGGENGAGYGKRK
3	61	80	RKRKPKNRGGENGAGYGKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	5e-37	HD-ZIP family protein