PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0232.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YC

Protein Properties

Length: 267aa MW: 29011.1 Da PI: 4.7979

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0232.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	50.7	3.8e-16	6	80	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kaladp0060s0232.2.p 6 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDMTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLKEVVNK 80 8*********************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MIVFQARIKK IMQADEDVGK IALAVPVLVS KALELFLQDL CDMTYGITVQ TGAKTVSSLH 60 LKHCVQRYSI FDFLKEVVNK VPDYTHSGTS GEVQTISRRR KGAGDELSDS DEYSKRSRLQ 120 EAVPGVGGGR GRGRGRGRGR GRGRVGHVAE PDDAQNDFEP ESSAVNLDAI QANNNNKGRE 180 LPSDFKGDGD GLTNPVVGKF DLNTEIKEKE STPSLATDDK VSAHSAIQSE NAELGISEMD 240 RMNFNPLQLG SMKSTFDDDE DYDDDG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	139	RGRGRGRGRG
2	130	140	RGRGRGRGRGR
3	132	141	RGRGRGRGRG
4	132	142	RGRGRGRGRGR
5	134	143	RGRGRGRGRG
6	134	144	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-55	NF-YC family protein