PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0060s0233.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YC

Protein Properties

Length: 254aa MW: 27606.5 Da PI: 4.6121

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0060s0233.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.3	5.7e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l ++ + ++ +t+ ++ +v+r ifdfl ++v + Kaladp0060s0233.2.p 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDHTYGITVQTGAKTVSSLHLKHCVQRYSIFDFLSEVVSK 69 899*************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DHTYGITVQT GAKTVSSLHL KHCVQRYSIF 60 DFLSEVVSKV PDYSHSGTSG EVRTISRRRK AAGDDLTDSD EDSKRSRLPE TGHATGGGRG 120 RGRGRGRGRG RVGRMAEPDN VQHDFEPEAS MVNLDAAQAN DSKGRDLLSN VKEEADGLTN 180 PAVGKFDLNA EIKENESMPS SEVPDILSEH AVIKQERIPG WSLSEIDRLN INPLQLGSMN 240 SALDDEDYDE EDG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	128	RGRGRGRGRG
2	119	129	RGRGRGRGRGR
3	121	130	RGRGRGRGRG
4	121	131	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-53	NF-YC family protein