PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0030.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 227aa    MW: 24429.8 Da    PI: 8.4285
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0030.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.94.4e-3041081100
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC ++p++     p++q +++ +++k++G++ ++++l+a+++++r ++++sl+yeA+ r+ dP+yGavg++++ ++
  Kaladp0062s0030.1.p   4 SCNGCRVLRKGCPDDCNIRPCLswitsPEAQGNATVFLAKFYGRAGLMNFLNATSDHHRAEIFKSLLYEACGRIVDPIYGAVGLLWSNNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallkee 100
                            ++++++++l +++
  Kaladp0062s0030.1.p  94 PHCEAAVDAVLSGRQ 108
                          ******999887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MRTSCNGCRV LRKGCPDDCN IRPCLSWITS PEAQGNATVF LAKFYGRAGL MNFLNATSDH  60
HRAEIFKSLL YEACGRIVDP IYGAVGLLWS NNWPHCEAAV DAVLSGRQIV PIQNPHNPSG  120
HAIAALNSFD IRHVARPSPP EPDMAPRPAI RTKPRSARCP KHNPVRANRT ELGGIGPSDG  180
SGFSVETVEG SVANRVNPNQ CRGSDDRLEM GLELSLNLGP GPSKCI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-60LBD family protein