PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0066s0109.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 368aa MW: 41397.6 Da PI: 8.168

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0066s0109.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	44	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl Kaladp0066s0109.1.p 44 RGPWTPREDTLLTNYIQTHGEGNWRSLPKKAGLLRCGKSCRLRWMNYL 91 89****************************99**********97 PP
2	Myb_DNA-binding	49.2	1.2e-15	97	142	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l Kaladp0066s0109.1.p 97 RGNISSDEDDLIIRLHILLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 142 78999***************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MPMVLGKCVL WRCCVHLAFA PIISSLRSLS MGRAPCCSKV GLHRGPWTPR EDTLLTNYIQ 60 THGEGNWRSL PKKAGLLRCG KSCRLRWMNY LRPDIKRGNI SSDEDDLIIR LHILLGNRWS 120 LIAGRLPGRT DNEIKNYWNT HLSKKLRLQG IDPDTHKPLP HGSGEANSRK KKNKKGKLSS 180 ASMTNNNNNG QINKKQEQAL TKKRNKDSRD ADEKKNRHTI HLPKPVRVKS FSMLPRNESF 240 VSMTSAASDR VINNNVGDDD NNNNNNGTGG ASFFIGDDEC GDYKMMMMRG EDGSDDLDLG 300 FDHHQYQLCA GDEDDFISGE HNLDKLYNEY LQVLKTTNEV ADNNAATTDD DHELLDQLDS 360 FAESFLV*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MPMVLGKCVL WRCCVHLAFA PIISSLRSLS MGRAPCCSKV GLHRGPWTPR EDTLLTNYIQ  60
THGEGNWRSL PKKAGLLRCG KSCRLRWMNY LRPDIKRGNI SSDEDDLIIR LHILLGNRWS  120
LIAGRLPGRT DNEIKNYWNT HLSKKLRLQG IDPDTHKPLP HGSGEANSRK KKNKKGKLSS  180
ASMTNNNNNG QINKKQEQAL TKKRNKDSRD ADEKKNRHTI HLPKPVRVKS FSMLPRNESF  240
VSMTSAASDR VINNNVGDDD NNNNNNGTGG ASFFIGDDEC GDYKMMMMRG EDGSDDLDLG  300
FDHHQYQLCA GDEDDFISGE HNLDKLYNEY LQVLKTTNEV ADNNAATTDD DHELLDQLDS  360
FAESFLV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	206	RKKKNKKGKLSSASMTNNNNNGQINKKQEQALTKKRNK
2	171	208	RKKKNKKGKLSSASMTNNNNNGQINKKQEQALTKKRNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-70	MYB family protein