PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0072s0078.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 201aa    MW: 21748.9 Da    PI: 7.5782
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0072s0078.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.13.8e-302105199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C + C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++ ++++
  Kaladp0072s0078.1.p   2 SCNGCRVLRKGCRDTCILRPCLewidsPESQGHATIFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLGSGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          +++++++e++l++ 
  Kaladp0072s0078.1.p  92 HVCEVAVETVLQGG 105
                          *******9998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MSCNGCRVLR KGCRDTCILR PCLEWIDSPE SQGHATIFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLGSGN WHVCEVAVET VLQGGKLQPL RDLARCSPDS  120
DEASEVAFQP LNSQMVKRMR RDMDKSGDVD LSLTMSCLAP DSGRSGSPSM DSEKSGTMRS  180
DGNGGRRRVD REVKLLDLFC *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-74LBD family protein