PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0076s0270.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 400aa MW: 42986.6 Da PI: 8.422

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0076s0270.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8.3e-12	39	63	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ Cr+++++G C +G++C+F+H++ Kaladp0076s0270.2.p 39 EVVCRYYMKNGVCGFGASCRFNHPR 63 679********************96 PP
2	zf-CCCH	26.3	1.3e-08	69	88	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 f++ t Ck+G++CkF H++ Kaladp0076s0270.2.p 69 FYMTTNNCKFGASCKFDHPK 88 8*****************96 PP
3	zf-CCCH	36.8	6.6e-12	107	132	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f rtG+Ck+G++CkF H++ Kaladp0076s0270.2.p 107 GEKECSYFVRTGQCKFGATCKFDHPQ 132 7899********************97 PP
4	zf-CCCH	23.9	7.2e-08	277	301	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++Cr+++++G+CkyG +Ck+ H+ Kaladp0076s0270.2.p 277 DQPECRNYFKYGYCKYGFSCKYRHP 301 689*******************998 PP
5	zf-CCCH	24.5	4.6e-08	324	346	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + C ++a G Ck+G++CkF+H Kaladp0076s0270.2.p 324 VPYCTNYAHQGVCKFGSSCKFNH 346 578******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MGSYGRNREA GGGSASDPQP LEEPMRKLRL SAYPERPSEV VCRYYMKNGV CGFGASCRFN 60 HPRDAAAAFY MTTNNCKFGA SCKFDHPKHD GETKICLNYL GYPLRPGEKE CSYFVRTGQC 120 KFGATCKFDH PQPVHSHVST ATLTPGDASA PLPPKSNTQV HPPPTPAPQP YGVITGNWQV 180 PRTPIFLPAP YPCIQGTYGP TFLQPGVFSM PSWGPYPIQM SPVVSPRIQP PIGSGPRYDM 240 SHLSAPASPY AGPYPLIPTA GAFSIIQKEP ILSERPDQPE CRNYFKYGYC KYGFSCKYRH 300 PSEVNASKPT PPHGTTEPPL RAGVPYCTNY AHQGVCKFGS SCKFNHQTGA GTLSYSPSAS 360 SLADLPVAPC PLECSVGTTA PSSSSSEPEI ASGSAKESA*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MGSYGRNREA GGGSASDPQP LEEPMRKLRL SAYPERPSEV VCRYYMKNGV CGFGASCRFN  60
HPRDAAAAFY MTTNNCKFGA SCKFDHPKHD GETKICLNYL GYPLRPGEKE CSYFVRTGQC  120
KFGATCKFDH PQPVHSHVST ATLTPGDASA PLPPKSNTQV HPPPTPAPQP YGVITGNWQV  180
PRTPIFLPAP YPCIQGTYGP TFLQPGVFSM PSWGPYPIQM SPVVSPRIQP PIGSGPRYDM  240
SHLSAPASPY AGPYPLIPTA GAFSIIQKEP ILSERPDQPE CRNYFKYGYC KYGFSCKYRH  300
PSEVNASKPT PPHGTTEPPL RAGVPYCTNY AHQGVCKFGS SCKFNHQTGA GTLSYSPSAS  360
SLADLPVAPC PLECSVGTTA PSSSSSEPEI ASGSAKESA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-84	C3H family protein